BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892780 Length=528 Score E Sequences producing significant alignments: (Bits) Value AT5G08480.2 | Symbols: | VQ motif-containing protein | chr5:27... 859 0.0 > AT5G08480.2 | Symbols: | VQ motif-containing protein | chr5:2743620-2745111 FORWARD LENGTH=918 Length=918 Score = 859 bits (465), Expect = 0.0 Identities = 511/531 (96%), Gaps = 12/531 (2%) Strand=Plus/Plus Query 1 ATGAATAACAAAGGGAGTCAGAACGTTG---CAACCTGCAAGCCTGTCACTACATTTGTC 57 ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 293 ATGAATAGCAAAGGGAGTCAAAACGTTGCAACAACCTGCAAGCCTGTCACTACATTTGTC 352 Query 58 CAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTGACAGGTCCATCAGAGAAC 117 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 353 CAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTGACAGGTCCAACAGAGAAC 412 Query 118 AACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACCGCCATACAAAAGAGGCCG 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 AACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACCGCCATACAAAAGAGGCCA 472 Query 178 ACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAGCTTGAAATTGTCAAACCT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 ACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAGCTTGAAATTGTCAAACCT 532 Query 238 CCTCTAAGCTTTAAGCCCACTGGTACGACACCATCATCTAAATCTGGTAATACCAACCTT 297 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 CCTCTGAGCTTTAAGCCCACTGGTACGACACCATCATCTAAATCTGGTAATACCAACCTT 592 Query 298 TTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 TTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGG 652 Query 358 GAGAAAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAA 417 || | | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 GA-A---C----C-AGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAA 703 Query 418 GAGAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCAGGGTATACAGAACCAGAA 477 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 704 GAAAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCGGGGTATACAGAACCAGAA 763 Query 478 TTGCTTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGGCAAACCATAA 528 ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 764 TTGCTTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGCAAACCATAA 814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25267775941 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5