BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892780

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G08480.2 | Symbols:  | VQ motif-containing protein | chr5:27...   859    0.0  


> AT5G08480.2 | Symbols:  | VQ motif-containing protein | chr5:2743620-2745111 
FORWARD LENGTH=918
Length=918

 Score =  859 bits (465),  Expect = 0.0
 Identities = 511/531 (96%), Gaps = 12/531 (2%)
 Strand=Plus/Plus

Query  1    ATGAATAACAAAGGGAGTCAGAACGTTG---CAACCTGCAAGCCTGTCACTACATTTGTC  57
            ||||||| |||||||||||| |||||||   |||||||||||||||||||||||||||||
Sbjct  293  ATGAATAGCAAAGGGAGTCAAAACGTTGCAACAACCTGCAAGCCTGTCACTACATTTGTC  352

Query  58   CAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTGACAGGTCCATCAGAGAAC  117
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  353  CAAACTGACACCAACACTTTCAGAGAAATTGTGCAGCGCTTGACAGGTCCAACAGAGAAC  412

Query  118  AACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACCGCCATACAAAAGAGGCCG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  413  AACGCTGCAGCAGCAACACCAGAAGCAACAGTGATAAAAACCGCCATACAAAAGAGGCCA  472

Query  178  ACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAGCTTGAAATTGTCAAACCT  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  ACTTCAAAGCTCCATGAGAGAAGGCAATGTATGAGGCCAAAGCTTGAAATTGTCAAACCT  532

Query  238  CCTCTAAGCTTTAAGCCCACTGGTACGACACCATCATCTAAATCTGGTAATACCAACCTT  297
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  533  CCTCTGAGCTTTAAGCCCACTGGTACGACACCATCATCTAAATCTGGTAATACCAACCTT  592

Query  298  TTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGG  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTAACAAGTCCAGTGGGCACCCCTTCTTCATTGTTCTCTAACTTGTCCTTGATAGAAGGG  652

Query  358  GAGAAAGCAGAACCAGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAA  417
            || |   |    | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  653  GA-A---C----C-AGATAGTTGTACAACAAACATCGAAGAAGAGGAGAAAGCCATTAAA  703

Query  418  GAGAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCAGGGTATACAGAACCAGAA  477
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  704  GAAAGACGCTTTTACTTGCATCCATCGCCAAGGTCTAAACCGGGGTATACAGAACCAGAA  763

Query  478  TTGCTTACTTTGTTTCCTTTAGCATCTCCCAATTCGAGTGGCAAACCATAA  528
            ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  764  TTGCTTACTTTGTTTCCTTTAACATCTCCCAATTCGAGTGGCAAACCATAA  814



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5