BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892784
Length=2427
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein |... 822 0.0
AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein |... 516 4e-145
AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfami... 483 5e-135
AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfami... 172 1e-41
AT5G06130.2 | Symbols: | chaperone protein dnaJ-related | chr5... 150 5e-35
> AT5G08500.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:2748193-2751771 FORWARD LENGTH=2022
Length=2022
Score = 822 bits (445), Expect = 0.0
Identities = 468/479 (98%), Gaps = 2/479 (0%)
Strand=Plus/Plus
Query 800 AGGAGGTTGATGGTAAGGACTCGGATCTCAAGGATGAGGGCCCTGTGGAATGGGTATCCT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 AGGAGGTTGATGGTAAGGACTCGGATCTCAAGGATGAGGGCCCTGTGGAATGGGTATCCT 702
Query 860 ACTGGAAACCAAATGTCACAAATAACCTAGTCGATGACTTTACTCGCTATCCACAGCATG 919
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 703 ACTGGAAACCAAATGTCACAATTAACCTAGTCGATGACTTTACTCGCTATCCACAGCATG 762
Query 920 GTGTACCACCAAACATTGATCCTTACTTACTGGTGGAACCTAGTACAGTAAACTACTACC 979
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 763 GTGTACCACCAAACATTTATCCTTACTTACTGGTGGAACCTAGTACAATAAACTACTACC 822
Query 980 CTACAGtttttttCAATGAGTTTTGGCTGCTAAGGGACAAGTTGATTTTAATCAATGAGA 1039
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 823 CTACAGTTTTCTTCAATGAGTTTTGGTTGCTAAGGGACAAGTTGATTTTAATCAATGAGA 882
Query 1040 CGGTCTCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGC 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CGGTCTCAGAGCTGCCACTTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGC 942
Query 1100 TGTTTCAGCAGATTGATCAGTCTTTCCAGATTCACCGTAGCTATGGAAGCATGCTTGATG 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TGTTTCAGCAGATTGATCAGTCTTTCCAGATTCACCGTAGCTATGGAAGCATGCTTGATG 1002
Query 1160 TTGAATCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAATCCCTATCTGTTGGGCGTCA 1219
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GTGAATCTGACGAACTAAAGAGGGTGTTTTTGGAAGGAAATCCCTATCTGTTGGGCGTCA 1062
Query 1220 CAATGTT-GTTTCGATGCTTCATTCTGTATTTGACTTCCTTGCATTCAAAAAATGCTAT 1277
| ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 1063 CTATGTTTGTTTCGATGCTTCATTCTGTATTCGACTTCCTTGCATTCAAAAA-TGATAT 1120
Score = 93.5 bits (50), Expect = 9e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1303 GATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 GATATCCAGTTTTGGAACAAGAACAAATCTATGGAAGGACTGTCTGCGAA 1165
> AT5G23575.1 | Symbols: | Transmembrane CLPTM1 family protein
| chr5:7946310-7950253 FORWARD LENGTH=2247
Length=2247
Score = 516 bits (279), Expect = 4e-145
Identities = 407/469 (87%), Gaps = 8/469 (2%)
Strand=Plus/Plus
Query 813 TAAGGACTCGGATCTCAAGGATGAGGGCCCTGTGGAATGGGTAT-CCTACTGGAAACCAA 871
|||| | || |||| |||||| |||| ||||||||||||| ||| ||| ||||||||| |
Sbjct 847 TAAGAAATCAGATCCCAAGGAAGAGGTCCCTGTGGAATGGATATCCCT-CTGGAAACCTA 905
Query 872 ATGTCACAAATAACCTAGTCGATGACTTTACTCGCTATCCACAGCATGGTGTACCACCAA 931
||||||| | |||||| || ||||| ||||||| |||| ||||| |||||||||||||||
Sbjct 906 ATGTCACGATTAACCTGGTTGATGATTTTACTCACTATTCACAGAATGGTGTACCACCAA 965
Query 932 ACATTGATCCTTACTTACTGGTGGAACCTAGTACAGTAAACTACTACCCTACAGtttttt 991
|||||| |||| |||||||||| ||||| | |||| ||| ||||| |||||| ||| |
Sbjct 966 ACATTGCTCCTCACTTACTGGTAGAACCGACCACAGGAAATTACTATCCTACAATTTACT 1025
Query 992 tCAATGAGTTTTGGCTGCTAAGGGACAAGTTGATTTTAATCAATGAGACGGTCTCAGAGC 1051
||||||||||||||||||||||||||||||| ||| | |||||||||| |||||||| |
Sbjct 1026 TCAATGAGTTTTGGCTGCTAAGGGACAAGTTCATTCCAGTCAATGAGACAGTCTCAGAAC 1085
Query 1052 TGCCACTTAATCTGGAAGTAAGCCCCATAAGCATGACAAAGTGGCAGCTGTTTCAGCA-G 1110
| ||||| ||||||||| |||| ||||||||||||| |||||||| ||||||||||| |
Sbjct 1086 TACCACTAAATCTGGAAATAAGTCCCATAAGCATGATGAAGTGGCAACTGTTTCAGCAAG 1145
Query 1111 ATTGATCAGTCTTTCCAGATTCACCGTAGCTATGGAAGCATGCTTGATGTTGAATCTGAC 1170
||||||| ||||||||||| || ||||||||||||||||||||||| | ||||||||||
Sbjct 1146 -TTGATCAATCTTTCCAGATGCAGCGTAGCTATGGAAGCATGCTTGACGGTGAATCTGAC 1204
Query 1171 GAACTAAAGAGGGTGTTTTTGGAAGGAAATCCCTATCTGTTGGGCG-TCACAATGTT-GT 1228
|||||||||| ||||||||||||||||||||||||||| ||||| | |||| ||||| ||
Sbjct 1205 GAACTAAAGAAGGTGTTTTTGGAAGGAAATCCCTATCTTTTGGG-GATCACGATGTTTGT 1263
Query 1229 TTCGATGCTTCATTCTGTATTTGACTTCCTTGCATTCAAAAAATGCTAT 1277
||||||||||||||| || || |||||||| ||||||||||| || |||
Sbjct 1264 TTCGATGCTTCATTCAGTGTTCGACTTCCTGGCATTCAAAAA-TGATAT 1311
> AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2701013-2707273 FORWARD LENGTH=3242
Length=3242
Score = 483 bits (261), Expect = 5e-135
Identities = 293/309 (95%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 443 AGGAATTTGTGGCACCTTCTGCCGCTGTTAAGTGTCTTAATATTGGGAGGAAGTCCTCGA 502
||||||||||||||| |||||| |||||||| |||||||| ||||||||||||||||| |
Sbjct 388 AGGAATTTGTGGCACATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCA 447
Query 503 GGGTTCTCGTAACTGGCGGGGAAGATCACAAGGTCAATCTATGGGCTATTGGTAAGCCCA 562
|||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 448 GGGTTCTCGTTACAGGCGGAGAAGATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCA 507
Query 563 ACGCCATCCTGAGCTTGTATGGGCACTCGAGTGGGATTGATTCAGTAACGTTTGATGCTT 622
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 508 ACGCCATCCTGAGCTTGTATGGGCACTCTAGCGGGATTGATTCAGTAACATTTGATGCTT 567
Query 623 CGGAAGGCTTAGTAGCAGCTGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGG 682
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CGGAAGGCTTAGTAGCAGCAGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGG 627
Query 683 AGGCAAAGGTTGTCAGAACTCTCACTGGTCACAGGTCGAACTGCGTATCTGTGAATTTTC 742
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 628 AAGCAAAGGTTGTCAGAACTCTCACTGGTCACAGGTCAAACTGCGTATCCGTGAATTTTC 687
Query 743 ACCCTTTTG 751
|||||||||
Sbjct 688 ACCCTTTTG 696
Score = 381 bits (206), Expect = 2e-104
Identities = 234/248 (94%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 57 GGAATTTGTGGCACATTCCGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCAAA 116
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 389 GGAATTTGTGGCACATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAG 448
Query 117 GGTTCTCGTAACAGGCGGGGAAGATCACAAGGTCAATCTGTGGGCTATTGGTAAGCCCAA 176
||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 449 GGTTCTCGTTACAGGCGGAGAAGATCACAAGGTTAATCTATGGGCTATTGGTAAGCCCAA 508
Query 177 CGCCATCCTGAGCTTGTATGGGCACTCGAGTGGGGTTGATTCAGTAACGTTTGATGCTTC 236
||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 509 CGCCATCCTGAGCTTGTATGGGCACTCTAGCGGGATTGATTCAGTAACATTTGATGCTTC 568
Query 237 GGAAGGCTTACTAGCAGCAGGAGCTGCTAGTGGTACAACTAAACTTTGGGATCTGGAGGA 296
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 569 GGAAGGCTTAGTAGCAGCAGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTGGAGGA 628
Query 297 GGCAAAGG 304
|||||||
Sbjct 629 AGCAAAGG 636
Score = 230 bits (124), Expect = 6e-59
Identities = 136/142 (96%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 304 GACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATACTTACAAGGGT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATACTTACAAGGGT 782
Query 364 CACACTCGAGGGGTCAATGTACTCAGATTCACTCAAGATGGTCGTTGGACTGTATCTGGA 423
|||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 783 CACACTAGAGGGGTCAACGTACTCAGATTCACTCCAGATGGTCGTTGGATTGTATCTGGA 842
Query 424 GGAAAAGATTATGTTGTCAAGG 445
||| ||||| ||||||||||||
Sbjct 843 GGAGAAGATAATGTTGTCAAGG 864
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATGAACACCAAGCGCGCCTACAAGCTCC 28
||||||||||||||||||||||||||||
Sbjct 360 ATGAACACCAAGCGCGCCTACAAGCTCC 387
> AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7893671-7900387 REVERSE LENGTH=3351
Length=3351
Score = 172 bits (93), Expect = 1e-41
Identities = 113/123 (92%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 304 GACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATACTTACAAGGGT 363
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 799 GACACAAATCTTAAGATATGGGATATACGAAAAAAGGGCTGCATCCATACTTACAAGGGT 858
Query 364 CACACTCGAGGGGTCAATGTACTCAGATTCACTCAAGATGGTCGTTGGACTGTATCTGGA 423
||||| ||||| |||||||||||||||||||| | ||||||||| ||| ||||||||||
Sbjct 859 CACACGCGAGGAGTCAATGTACTCAGATTCACCCCAGATGGTCGCTGGGTTGTATCTGGA 918
Query 424 GGA 426
|||
Sbjct 919 GGA 921
> AT5G06130.2 | Symbols: | chaperone protein dnaJ-related | chr5:1853432-1855888
REVERSE LENGTH=1395
Length=1395
Score = 150 bits (81), Expect = 5e-35
Identities = 177/219 (81%), Gaps = 23/219 (11%)
Strand=Plus/Plus
Query 2165 TCTGTATCATTGAGGGATCAGAGACAGTTCAAGATTTTTGTGCAGATGCAGCTCCAGGAA 2224
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 334 TCTGTATCATTGAGGGATCAGAGACAGTTCAAGACTTT-GTGCAGATGCAGCTTCAGGAA 392
Query 2225 ATCCAAGAGA-C----G-------CG-A-TAAGACCTTTCTCCTTATTGAAGAAGTCAGG 2270
|||||||| | | | || | ||||| |||||||| || || ||||| |||
Sbjct 393 ATCCAAGATAACATAAGGAGTAGACGCAATAAGATATTTCTCCTCATGGAGGAAGTGAGG 452
Query 2271 AGGTTACGAGCGCAGCAACGGATTAAGAGTGTTAAAGCCATCAATGAGCACAGAG-GC-- 2327
|||||||| | ||||||||| || |||||||||||||||||||||||| |||| | ||
Sbjct 453 AGGTTACGTGTGCAGCAACGTATCAAGAGTGTTAAAGCCATCAATGAGGACAGTGAGCTC 512
Query 2328 -A----ACCGAGATACCTGACATCCCATCTTCCATTCCT 2361
| |||||||| ||||| ||| ||||||| ||||||
Sbjct 513 GAGGCTACCGAGATGCCTGAGATCACATCTTCTATTCCT 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120531508545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5