BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892791
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1724 0.0
> AT5G08460.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:2733220-2735455 FORWARD LENGTH=1262
Length=1262
Score = 1724 bits (933), Expect = 0.0
Identities = 1086/1160 (94%), Gaps = 10/1160 (1%)
Strand=Plus/Plus
Query 1 ATGCATGATAGTGAAATATTCAAATTTAAAGAC---ATGATGATGTCTTGCACAGTACAA 57
||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGCATGATAGTGAAATATTCAAGTTTAAAGACATGATGATGATGTCTTGCACAGTTCAA 60
Query 58 TCATTAGTGCTTGTTCCATGGTTTCTAGTAGTAGTAGGACTTGCCGGTGGAGAAGTCTCA 117
||||||| |||||||||||||||||||||||| | | ||| ||||||||||||| ||||
Sbjct 61 ACATTAGTACTTGTTCCATGGTTTCTAGTAGTATTTGTACTCGCCGGTGGAGAAGACTCA 120
Query 118 TCC--GA-GACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCGTTGGTGGACAAC 174
||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 TCCGAGACGACGGCAATGTTTCCGGCGATGTTTGTGTTCGGAGACTCTTTGGTGGATAAC 180
Query 175 GGAAACAATAACCACTTGAACTCATTGGCTAGGTCCAACTATCTCCCTTACGGCATTGAT 234
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 181 GGAAACAATAACCACTTGAACTCACTGGCTAGGTCCAACTATCTCCCTTACGGCATCGAT 240
Query 235 TTCGCCGGAAATCAACCCACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATG 294
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCGCTGGAAATCAACCAACCGGTCGCTTCTCTAACGGCAAAACTATCGTCGATTTCATT 300
Query 295 GGAGAGTTGCTAGGGCTGCCGGAGATACCCGCATTTATGGACACGGTGGACGGAGGAGTG 354
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 301 GGAGAGTTGCTAGGGCTGCCGGAGATACCGGCGTTTATGGACACGGTTGACGGAGGAGTG 360
Query 355 GATATTCTCCAGGGAGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 414
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATATTCTCCATGGTGTGAACTATGCCTCAGCTGCCGGAGGAATCTTAGAGGAAACCGGT 420
Query 415 CGACATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAAAAGACATTA 474
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CGCCATCTGGGAGAGAGATTTAGCATGGGAAGACAAGTGGAGAACTTCGAGAAGACATTA 480
Query 475 ATGGAGATCAGTAGGAGCATGAGGAGAGAGTCAGTAAAAGAGTACATGGCAAAGTCATTG 534
|||||||| |||||||||||||||| ||||||||| || || || |||||||||||||||
Sbjct 481 ATGGAGATAAGTAGGAGCATGAGGAAAGAGTCAGTGAAGGAATATATGGCAAAGTCATTG 540
Query 535 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAACGCTTTTT 594
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 541 GTGGTGGTGTCATTGGGTAACAATGACTACATTAACAATTATCTGAAACCAAGGCTATTC 600
Query 595 CTCACTAGCTCCATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAA-TTCTAC 653
||| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 601 CTCTCAAGCTCTATTTACGACCCTACTTCTTTCGCCGACCTCCTTCTCTCCAACTTC-AC 659
Query 654 CACTCATCTCCTTGAATTGTACGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGG 713
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 CACTCATCTCCTTGAATTGTATGGAAAGGGGTTTAGGAAATTTGTAATAGCCGGTGTGGG 719
Query 714 TCCATTGGGTTGCATACCGGACCAACTAGCCGCCCGAGCGGCTCCGCCAGGTGAATGTGT 773
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 720 TCCATTGGGTTGCATACCAGACCAACTAGCCGCCCAAGCGGCTCTGCCAGGTGAATGTGT 779
Query 774 GGAGGCGGTTAACGAGATGGCTGAACTCTTCAACAACCGCCTCGTGTCGCTGGTGGACCG 833
||||| || ||||||||||||||||| ||||||||||| || || ||||||||||| ||
Sbjct 780 CGAGGCTGTAAACGAGATGGCTGAACTTTTCAACAACCGTCTTGTATCGCTGGTGGATCG 839
Query 834 TCTTAATTCCGATAGTAAAACTGCTAGTGAAGCCATCTTTGTTTATGGCAATACCTATGG 893
||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 840 TCTCAATTCCGATAACAAAACCGCTAGTGAAGCCATCTTTGTTTACGGTAATACCTATGG 899
Query 894 AGCCGCCGTGGATATCCTCACAAACCCTTTTAATTACGGATTCGAAGTGACGGATAGAGG 953
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 900 AGCCGCCGTGGATATTCTCACCAACCCATTTAATTACGGATTCGAAGTGACGGATAGAGG 959
Query 954 GTGTTGTGGAGTAGGTAGAAACAGAGGAGAAATAACGTGTTTGCCACTAGCGGTACCATG 1013
||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 960 GTGTTGTGGAGTAGGGAGAAATAGAGGAGAAATAACGTGTCTGCCATTAGCGGTACCATG 1019
Query 1014 TGCTTTCAGAGACCGACATGTGTTCTGGGATGCTTTTCATCCAACACAAGCTTTTAATCT 1073
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 CGCTTTCAGAGACCGACATGTGTTCTGGGATGCATTTCATCCAACACAAGCTTTTAATCT 1079
Query 1074 CATAATTGCACTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCTATTAATCTTTC 1133
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 CATAATTGCTCTCAGAGCCTTTAATGGTTCCAAATCCGATTGTTACCCCATTAATCTTTC 1139
Query 1134 TCAA-TTGTCTCGTCTCTAA 1152
|||| || ||||||||||||
Sbjct 1140 TCAACTT-TCTCGTCTCTAA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5