BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892834

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09250.1 | Symbols: KIWI | ssDNA-binding transcriptional reg...   527    3e-149


> AT5G09250.1 | Symbols: KIWI | ssDNA-binding transcriptional regulator 
| chr5:2875232-2876575 REVERSE LENGTH=618
Length=618

 Score =  527 bits (285),  Expect = 3e-149
 Identities = 311/324 (96%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTTCGAGAGGAAAAAGGAAAGACGACGATGTCAGAGCATCAGATGACGAATCTGAA  60
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  106  ATGTCTTCTAGAGGAAAAAGGAAAGACGAAGATGTCAGAGCATCAGATGACGAATCTGAA  165

Query  61   TCCCACGCGCCGGCTAAGAAAGTCGCAAAGCCAGCAGACTCCTCCGACGAGTCTGACGAC  120
             ||||||||||||||||||||||||||||||||||||||   |||||| |||||||||| 
Sbjct  166  ACCCACGCGCCGGCTAAGAAAGTCGCAAAGCCAGCAGACGATTCCGACCAGTCTGACGAT  225

Query  121  ATCGTCGTCTGCAACATATCGAAGAATAGGAGAGTCTCTGTGAGGAATTGGAACGGGAAG  180
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  226  ATCGTCGTCTGCAACATATCTAAGAATAGGAGAGTCTCTGTAAGGAATTGGAACGGGAAG  285

Query  181  ATTTGGATTGACATTCGTGAGTTTTATGTCAAGGACGGAAAGACTTTGCCTGGCAAGAAA  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  286  ATTTGGATTGACATTCGTGAGTTCTATGTCAAGGACGGAAAGACTTTGCCTGGCAAGAAA  345

Query  241  GGCATTTCTCTAAGCGTGGATCAGTGGAACACTCTTCGGAACCACGCAGAGGATATCGAG  300
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  GGTATCTCTCTAAGCGTGGATCAGTGGAACACTCTTCGGAACCACGCAGAGGATATCGAG  405

Query  301  AAGGCCCTCTCTGACCTTTCTTAG  324
            ||||||||||||||||||||||||
Sbjct  406  AAGGCCCTCTCTGACCTTTCTTAG  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5