BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892851
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09430.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1552 0.0
> AT5G09430.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:2932162-2933362 FORWARD LENGTH=936
Length=936
Score = 1552 bits (840), Expect = 0.0
Identities = 904/936 (97%), Gaps = 0/936 (0%)
Strand=Plus/Plus
Query 1 ATGTTTGATCATCTGAAACTGTTGCGATGCTTCAGCTTCACGGCGTCGCGAGATTGGTTA 60
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTGATCATATGAAACTGCTGCGATGCTTCAGCTTCACGGCGTCGCGAGATTGGTTA 60
Query 61 TTCCGGCAATCATTCGCAAACGCCGGTCTACGTTCCGTCACAACCGATCTCTCTCACGGC 120
|||||||||||||||||||||||||||||||||||||| || || |||||||| ||||||
Sbjct 61 TTCCGGCAATCATTCGCAAACGCCGGTCTACGTTCCGTAACGACAGATCTCTCCCACGGC 120
Query 121 AATTCAATCGCATCAACAGCTATGCATTGTTGGATCCCTAAATCCCCAAATCGATCTAAA 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 121 AATTCAATCGCATCAACAGCTATGCATTGTTGGATTCCTAAATCCCCGAATCGATCTAAA 180
Query 181 CCTAATCTCCTCCTCGTCCACGGATTCGGAGCCAACGCAATGTGGCAATACGGAGAACAT 240
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCTAATCTCCTCCTCCTCCACGGATTCGGCGCCAACGCAATGTGGCAATACGGAGAACAT 240
Query 241 CTCCGAGCTTTCACCGGCCGATTCAACGTCTACGTTCCCGATCTCCTCTTCTTCGGATTA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CTCCGAGCTTTCACCGGCCGATTCAACGTCTACGTTCCCGATCTCCTCTTCTTCGGGTTA 300
Query 301 TCATCCACATCGGAACCAAACCGATCCGAATCATTCCAGGCTCGGTGCCTGGTGAGGTTA 360
|||||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||
Sbjct 301 TCATCCACATCGGAACCAAACCGAACCGAATCTTTCCAGGCTCGGTGTCTGATGAGGTTA 360
Query 361 ATGGAAGCGCACGGAGTCCAGAGGATGAACATCGTCGGGATTAGCTACGGTGGATTCGTT 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 ATGGAAGCGCACGGAGTCCAGAGGATGAACATCGTCGGGATTAGTTACGGTGGATTCGTT 420
Query 421 GGGTATAGTTTAGCGGCGCAGTTTCCGGAGAAAGTAGAGAAGCTTGTGCTATGCTGCGCC 480
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 421 GGGTATAGTTTAGCGGCGCAGTTTCCGGAGAACGTTGAGAAGCTTGTGCTGTGCTGCGCA 480
Query 481 GGGGTTTGCTTGGAGGAGAAAGATATGGAGGACGGATTGTTTAAGGTACCGAATCTAGAA 540
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GGGGTTTGTTTGGAGGAGAAAGATATGGAGGACGGATTGTTTAAGGTGCCGAATCTAGAA 540
Query 541 GAAGCTACCGGAATTTTGATTCCTCAGACGCCGGAGAAGCTTAAGGAACTAATAAGATTC 600
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 541 GAAGCTACCGGAATTTTGATTCCTCAGACGCCGGAAAAGCTTAAGGAACTCATAAGATTC 600
Query 601 TCTTTCGTTAAGCCAATCAAAGGTGTTCCTTCGTTTTTCCTCTGGGATTTTATCGATGTA 660
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 TCTTTCGTTAAACCAATCAAAGGTGTTCCTTCGTTTTTTCTCTGGGATTTTATCGATGTA 660
Query 661 ATGTGTACGGAGTTTGTAGAGGAGAAGAGAGATTTGATCAAATCAATACTCAAAGATCGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 ATGTGTACGGAGTTTGTAGAGGAGAAGAGAGATTTGATCAAATCAATACTCAAAGATAGG 720
Query 721 AGACTTTCAGATCTTCCTAGGATCAAACAGAAATCATTGATCATATGGGGAGAAGAAGAT 780
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 AGACTTTCTGATCTTCCTAGGATCAAACAGAAATCGTTGATCATATGGGGAGAAGAAGAT 780
Query 781 CAAATATTTCCATTGGAACTAGGTTACAGATTAAAAAGACATATAGGAGAGAGTGCAGAG 840
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAAATATTTCCACTGGAACTAGGTTACAGATTAAAAAGACATATAGGAGAGAGTGCAGAG 840
Query 841 ATAGTGGTGATCAAGAACGCAGGACATGCTGTGAATTTGGAGAAGTCCAAGGAATTTGTC 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAGTGGTGATCAAGAAAGCAGGACATGCTGTGAATTTGGAGAAGTCCAAGGAATTTGTC 900
Query 901 AAGCATTTGAAATCTTTTCTCATTGACTCTTTCTGA 936
|||||||||||||||||||||||||||||||| |||
Sbjct 901 AAGCATTTGAAATCTTTTCTCATTGACTCTTTGTGA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5