BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892856
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09470.1 | Symbols: DIC3 | dicarboxylate carrier 3 | chr5:29... 1537 0.0
AT2G22500.1 | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein... 84.2 2e-15
> AT5G09470.1 | Symbols: DIC3 | dicarboxylate carrier 3 | chr5:2949241-2950513
REVERSE LENGTH=1014
Length=1014
Score = 1537 bits (832), Expect = 0.0
Identities = 961/1022 (94%), Gaps = 13/1022 (1%)
Strand=Plus/Plus
Query 1 ATGTGCTTCAAACCATTTCTTGAAGGTGGCATCGCCGCAATCATCGCCGGAGCTCTGACT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCTTCAAACCATTTCTTGAAGGTGGCATCGCCGCAATCATCGCCGGAGCTCTGACT 60
Query 61 CACCCATTAGACCTCATCAAAGTCCGTATGCAACTCCAAGGCGAACACTCTGTCTCTCTC 120
|||||||||||||||||||||||||||||||| || ||||||||||| ||| |||| |||
Sbjct 61 CACCCATTAGACCTCATCAAAGTCCGTATGCAGCTTCAAGGCGAACATTCTTTCTCGCTC 120
Query 121 GACCAAAACCCTAACCCTAATCTT-GTTCTTGATCATAATATTCTTCCCGTTAAACCATA 179
|||||||||||||||||||||||| | ||||||||| | | ||||||||| ||||| ||
Sbjct 121 GACCAAAACCCTAACCCTAATCTTAG-CCTTGATCAT-A-A-TCTTCCCGTGAAACCTTA 176
Query 180 CCGACCCGTTTTCGCTCTTGACTCTCTCATCGGCAGCATTTCCTTATTACCCTCATC-CA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 177 CCGACCCGTTTTCGCTCTTGACTCTCTCATCGGCAGCATTTCCTTATTACCCTTA-CACA 235
Query 239 TTCACGCGCCGTCTTCTTCCACGCGCTCTGTCATGACCCCTTTCGCCGTTGGGGCACACA 298
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 236 TTCACGCGCCGTCTTCTTCCACGCGCTCCGTCATGACCCCTTTCGCCGTAGGGGCACACA 295
Query 299 TTGTCAAAACCGACGGACCTGCCGCTCTCTTCTCCGGTGTTTCCGCCACCGTCCTCCGTC 358
||||||||||||| ||||| ||||||||||||||||| || ||||||||| |||||||||
Sbjct 296 TTGTCAAAACCGAAGGACCCGCCGCTCTCTTCTCCGGCGTCTCCGCCACCATCCTCCGTC 355
Query 359 AGATGCTTTACTCCGCCACCCGTATGGGTATTTACGACTTTCTCAAAAGGAGGTGGACTG 418
||||||||||||| ||||||||||||||||| ||||||||||| ||| | ||||||||||
Sbjct 356 AGATGCTTTACTCTGCCACCCGTATGGGTATATACGACTTTCTTAAACGAAGGTGGACTG 415
Query 419 ATCGACTCACCGGTAACTTCCCATTGGTAACCAAGATCACAGCTGGACTCATAGCCGGAG 478
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 416 ATCAACTCACCGGTAACTTCCCATTGGTAACCAAGATCACAGCTGGACTCATCGCAGGAG 475
Query 479 CCGTTGGATCAGTAGTAGGGAATCCTGCTGACGTGGCGATGGTGAGAATGCAAGCCGACG 538
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CCGTTGGATCAGTCGTCGGGAATCCTGCTGACGTGGCGATGGTGAGAATGCAAGCCGACG 535
Query 539 GAAGCTTGCCGTTAAACCGTCGCAGAAACTACAAGAGCGTCGTGGACGC-ACTCGAGC-G 596
||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |
Sbjct 536 GAAGCTTGCCGTTAAACCGTCGCAGAAACTACAAGAGCGTCGTGGACGCGA-TCGA-CAG 593
Query 597 GATCGCGAGGCAAGAAGGCGTCTCAAGCTTATGGCGTGGCTCGTGGCTAACCGTGAACCG 656
|||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 594 GATCGCAAGGCAAGAAGGCGTTTCAAGTTTATGGCGTGGCTCATGGCTAACCGTGAACCG 653
Query 657 TGCCATGATCGTGACTGCTTCTCAGCTCGCCACGTATGATCACGTCAAAGAAATCTTGGT 716
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 654 TGCCATGATCGTGACAGCTTCTCAGCTCGCTACGTATGATCACGTCAAAGAAATCTTGGT 713
Query 717 CGCCGGTGGACGTGGAACGCCAGGAGGGATCGGAACGCATGTGGCGGCGAGTTTTGCGGC 776
|| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 714 AGCTGGTGGCCGTGGAACGCCGGGAGGGATAGGAACGCATGTAGCGGCGAGTTTTGCGGC 773
Query 777 GGGGATTGTCGCAGCGGTGGCGTCAAATCCGATAGACGTTGTGAAGACGAGGATGATGAA 836
|||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 774 GGGGATCGTCGCGGCGGTGGCGTCGAATCCCATCGACGTTGTGAAGACGAGGATGATGAA 833
Query 837 TGCGGATAAGGAGAATTT-CGGTGGACCGTTGGATTGTGCGGTGAAGATGGTGGCAGAGG 895
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGCGGATAAGGAGA-TTTACGGTGGACCGTTGGATTGTGCGGTGAAGATGGTGGCAGAGG 892
Query 896 AAGGACCAATGGCTTTGTATAAAGGGCTTGTTCCGACGGCGACGAGGCAAGGACCGTTCA 955
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AAGGACCAATGGCTTTGTACAAAGGGCTTGTTCCGACGGCGACGAGGCAAGGACCGTTCA 952
Query 956 CGATGATATTGTTCCTTACCTTAGAACAAGTTCGTGGTTTGTTAAAAGACGTTAAATTTT 1015
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 953 CGATGATCTTGTTCCTTACCTTGGAACAAGTTCGTGGTCTGTTAAAAGACGTTAAATTTT 1012
Query 1016 GA 1017
||
Sbjct 1013 GA 1014
> AT2G22500.1 | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein
5 | chr2:9563224-9564751 REVERSE LENGTH=1528
Length=1528
Score = 84.2 bits (45), Expect = 2e-15
Identities = 90/112 (80%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 468 CATAGCCGGAGCCGTTGGATCAGTAGTAGGGAATCCTGCTGACGTGGCGATGGTGAGAAT 527
||| |||||||| | ||| | | || ||||||||||||||||||||||||||||| ||
Sbjct 660 CATCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGTGGCGATGGTGAGGAT 719
Query 528 GCAAGCCGACGGAAGCTTGCCGTTAAACCG-TCGCAGAAACTACAAGAGCGT 578
||||||||| || | || ||||| | | | | | ||||||||||| |||||
Sbjct 720 GCAAGCCGATGGTCGTTTACCGTTGA-CTGATAGAAGAAACTACAAAAGCGT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5