BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892858
Length=459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein ... 715 0.0
AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein ... 483 8e-136
AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein ... 466 8e-131
AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein ... 436 6e-122
> AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2952216-2953245 REVERSE LENGTH=683
Length=683
Score = 715 bits (387), Expect = 0.0
Identities = 435/459 (95%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGTCGAATCAGAGGTTTCCACAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 60
|||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 63 ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 122
Query 61 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 182
Query 121 GTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGATTGACGAGGAAGCCT 180
||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 183 GTCGAGCTCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCCT 242
Query 181 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATTAGAAGCACCAGCTGGTGAGAAGCCA 240
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 243 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCCC 302
Query 241 GAAGTAGTGAGAACACATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GAAGTAGTGAGAACCCATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 362
Query 301 ATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAAGCCTGAGATGATTGGA 360
|| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 363 ATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTGGA 422
Query 361 CATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGCAGGCCCGGTCAA 420
||||||||||| |||||||| ||| | ||||| || |||| |||||||| |||||||||
Sbjct 423 CATTACCTTGCGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGTCAT 482
Query 421 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 459
|||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 521
> AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2955113-2956673 REVERSE LENGTH=1163
Length=1163
Score = 483 bits (261), Expect = 8e-136
Identities = 397/463 (86%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGTCGAATCAGAGGTTTCCA-CAGCTGCTCTTGCGAAGAAGAGAACGTTCAA 59
|||||| | || ||| |||||| || || |||| | || | |||||||||||||||||
Sbjct 120 ATGGCTGATGTGGAACCAGAGG-TTGCAGCAGCAGGAGTTCCAAAGAAGAGAACGTTCAA 178
Query 60 -AAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATC 118
||| || ||||||||||||||||||||||||||||||| |||||| | || |||||||
Sbjct 179 GAAA-TTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATC 237
Query 119 TTGTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGATTGACGAGGAAGC 178
|||||||||||||| || ||||||| | |||||| | ||||||||||||||| ||||
Sbjct 238 TTGTCAAGCTCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGAGAAAGC 297
Query 179 CTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATTAGAAGCACCAGCTGGTGAGAAGC 238
|||||||| | || |||||| | ||||| |||||| ||| |||||||||||||||||||
Sbjct 298 CTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAGC 357
Query 239 CAGAAGTAGTGAGAACACATC-TAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGC 297
||||| ||||||||| || | | ||||||||| | ||| ||||||||||||||||||||
Sbjct 358 CAGAACCAGTGAGAACCCA-CTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGC 416
Query 298 ATCATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAAGCCTGAGATGATT 357
||||| ||||||||||| ||||||||||| |||||| | |||||||||||||||||||||
Sbjct 417 ATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGATGATT 476
Query 358 GGACATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGCAGGCCCGGT 417
|||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 477 GGACATTACCTTGCAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGG- 535
Query 418 CAA-GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 459
| |||||||| |||||||| ||||| |||||||||||||||
Sbjct 536 CGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGA 578
> AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:2953913-2954918 REVERSE LENGTH=652
Length=652
Score = 466 bits (252), Expect = 8e-131
Identities = 363/417 (87%), Gaps = 6/417 (1%)
Strand=Plus/Plus
Query 46 AAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATG 105
|||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||
Sbjct 108 AAGAGAACGTTCAAAAAGTTTTCCTTCAGAGGAGTCGATCTTGATGCTCTTCTCGACATG 167
Query 106 CCCACTGATGATCTTGTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGA 165
| |||||||||||||||||||| |||||| ||||||| | |||||| | |||||||
Sbjct 168 TCTACTGATGATCTTGTCAAGCTTTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGA 227
Query 166 TTGACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAA-TTAGAAGCACC 224
||||||||||||||||||||| | ||||||||| |||| ||||||||| || ||||||||
Sbjct 228 TTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGGAAAGCGAAAATT-GAAGCACC 286
Query 225 AGCTGGTGAGAAGCCAGAAGTAGTGAGAACACATCTAAGGAACATGGTGATTATGCCTGA 284
|||||| |||||||||| || ||||||||| || |||||||||||| | ||| |||||||
Sbjct 287 AGCTGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGATCATTGTGCCTGA 346
Query 285 AATGATTGGAAGCATCATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAA 344
||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 347 AATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAGGTCGAGATCAA 406
Query 345 GCCTGAGATGATTGGACATTACCTTG-CTGAATTCTCTATCTCGTACAAGCCAGTTAAGC 403
|| |||||||||||||||||| ||| |||| || || ||||| || ||||| |||||||
Sbjct 407 ACCAGAGATGATTGGACATTAC-TTGGCTGAGTTTTCAATCTCATATAAGCCTGTTAAGC 465
Query 404 ACGGCAGGCCCGGTCAAGGTGCTACACACT-CCTCTAGGTTTATCCCTCTCAAGTGA 459
| || ||||| ||| |||||||| || | |||| || ||||||||||||||||||
Sbjct 466 ATGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGATTTATCCCTCTCAAGTGA 521
> AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein
| chr5:17531302-17532370 FORWARD LENGTH=450
Length=450
Score = 436 bits (236), Expect = 6e-122
Identities = 366/428 (86%), Gaps = 12/428 (3%)
Strand=Plus/Plus
Query 38 TTGCGAAGAAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTC 97
||| ||| |||||||| |||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 29 TTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTC 88
Query 98 TTGACATGCCCACT-GATGATCTTGTCAAGC-TCTTCCCTGCCCGTATAAGAAGAAGGAT 155
| |||||| ||| | || ||||||||||| | | ||| | ||||||| | |||||| |
Sbjct 89 TCGACATGTCCA-TCGAAGATCTTGTCAAACAT-TTCAGTTCCCGTATTCGCAGAAGGTT 146
Query 156 GAGTAGAGGATTGACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATT 215
|||||||||||| || || ||||||||| | || ||||||||||||||||||||| |
Sbjct 147 TTCTAGAGGATTGACCAGAAAACCTATGGCTTTGATTAAGAAATTGCGCAAAGCGAAAAT 206
Query 216 AGAAGCACCAGCTGGTGAGAAGCCAGAAGT-AGTGAGAACACATC-TAAGGAACATGGTG 273
|| |||||||||||||||||||||| | | |||||||||||| | | ||||||||| |
Sbjct 207 GGAGGCACCAGCTGGTGAGAAGCCAGCA-TCAGTGAGAACACA-CTTGAGGAACATGATC 264
Query 274 ATTATGCCTGAAATGATTGGAAGCATCATCGGTGTGTACAACGGAAAGACTTTTAACCAA 333
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 265 ATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGTACAACGGAAAGACTTTTAACCAA 324
Query 334 ATCGAGATCAAGCCTGAGATGATTGGACATTACCTTG-CTGAATTCTCTATCTCGTACAA 392
||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||| |||||
Sbjct 325 GTCGAGATCAAGCCGGAGATGATTGGACATTAC-TTGGCTGAGTTCTCAATCTCATACAA 383
Query 393 GCCAGTTAAGCACGGCAGGCCCGGTCAAGGTGCTACACACT-CCTCTAGGTTTATCCCTC 451
|| || |||||||| ||||| ||| |||||||| || | |||| |||||||||||||
Sbjct 384 ACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGGTTTATCCCTC 442
Query 452 TCAAGTGA 459
||||||||
Sbjct 443 TCAAGTGA 450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21866470815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5