BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg892858 Length=459 Score E Sequences producing significant alignments: (Bits) Value AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein ... 715 0.0 AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein ... 483 8e-136 AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein ... 466 8e-131 AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein ... 436 6e-122 > AT5G09490.1 | Symbols: | Ribosomal protein S19 family protein | chr5:2952216-2953245 REVERSE LENGTH=683 Length=683 Score = 715 bits (387), Expect = 0.0 Identities = 435/459 (95%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 1 ATGGCTCAAGTCGAATCAGAGGTTTCCACAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 60 |||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||| Sbjct 63 ATGGCTGAAGTCGAACCAGATGTTTCCGCAGCTGCTCTTGCGAAGAAGAGAACGTTCAAA 122 Query 61 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 AAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATCTT 182 Query 121 GTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGATTGACGAGGAAGCCT 180 ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 183 GTCGAGCTCTTCCCTTCCCGTATAAGAAGAAGGATGAGTAGAGGATTAACGAGGAAGCCT 242 Query 181 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATTAGAAGCACCAGCTGGTGAGAAGCCA 240 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 243 ATGGCTCTCATCAAGAAATTGCGCAAAGCGAAACTAGATGCACCAGCTGGTGAGAAGCCC 302 Query 241 GAAGTAGTGAGAACACATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GAAGTAGTGAGAACCCATCTAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGCATC 362 Query 301 ATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAAGCCTGAGATGATTGGA 360 || ||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 363 ATTGGTGTGTACAATGGAAAGACTTTTAACCAAATCGAGATCAAACCGGAGATGATTGGA 422 Query 361 CATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGCAGGCCCGGTCAA 420 ||||||||||| |||||||| ||| | ||||| || |||| |||||||| ||||||||| Sbjct 423 CATTACCTTGCGGAATTCTCAATCACTTACAAACCCGTTAGGCACGGCAAGCCCGGTCAT 482 Query 421 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 459 ||||||||||||||||||||||||||||||||||||||| Sbjct 483 GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 521 > AT5G09510.1 | Symbols: | Ribosomal protein S19 family protein | chr5:2955113-2956673 REVERSE LENGTH=1163 Length=1163 Score = 483 bits (261), Expect = 8e-136 Identities = 397/463 (86%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 1 ATGGCTCAAGTCGAATCAGAGGTTTCCA-CAGCTGCTCTTGCGAAGAAGAGAACGTTCAA 59 |||||| | || ||| |||||| || || |||| | || | ||||||||||||||||| Sbjct 120 ATGGCTGATGTGGAACCAGAGG-TTGCAGCAGCAGGAGTTCCAAAGAAGAGAACGTTCAA 178 Query 60 -AAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATGCCCACTGATGATC 118 ||| || ||||||||||||||||||||||||||||||| |||||| | || ||||||| Sbjct 179 GAAA-TTCGCCTTCAAAGGAGTCGATCTCGATGCTCTTCTCGACATGTCTACCGATGATC 237 Query 119 TTGTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGATTGACGAGGAAGC 178 |||||||||||||| || ||||||| | |||||| | ||||||||||||||| |||| Sbjct 238 TTGTCAAGCTCTTCTCTTCCCGTATTCGCAGAAGGTTCTCTAGAGGATTGACGAGAAAGC 297 Query 179 CTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATTAGAAGCACCAGCTGGTGAGAAGC 238 |||||||| | || |||||| | ||||| |||||| ||| ||||||||||||||||||| Sbjct 298 CTATGGCTTTGATTAAGAAACTCCGCAAGGCGAAAAGAGAGGCACCAGCTGGTGAGAAGC 357 Query 239 CAGAAGTAGTGAGAACACATC-TAAGGAACATGGTGATTATGCCTGAAATGATTGGAAGC 297 ||||| ||||||||| || | | ||||||||| | ||| |||||||||||||||||||| Sbjct 358 CAGAACCAGTGAGAACCCA-CTTGAGGAACATGATCATTGTGCCTGAAATGATTGGAAGC 416 Query 298 ATCATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAAGCCTGAGATGATT 357 ||||| ||||||||||| ||||||||||| |||||| | ||||||||||||||||||||| Sbjct 417 ATCATTGGTGTGTACAATGGAAAGACTTTCAACCAAGTGGAGATCAAGCCTGAGATGATT 476 Query 358 GGACATTACCTTGCTGAATTCTCTATCTCGTACAAGCCAGTTAAGCACGGCAGGCCCGGT 417 |||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| || Sbjct 477 GGACATTACCTTGCAGAGTTCTCCATCTCGTACAAGCCAGTTAAGCACGGTAGGCCTGG- 535 Query 418 CAA-GGTGCTACACACTCCTCTAGGTTTATCCCTCTCAAGTGA 459 | |||||||| |||||||| ||||| ||||||||||||||| Sbjct 536 CGTTGGTGCTACCCACTCCTCCAGGTTCATCCCTCTCAAGTGA 578 > AT5G09500.1 | Symbols: | Ribosomal protein S19 family protein | chr5:2953913-2954918 REVERSE LENGTH=652 Length=652 Score = 466 bits (252), Expect = 8e-131 Identities = 363/417 (87%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 46 AAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTCTTGACATG 105 |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| Sbjct 108 AAGAGAACGTTCAAAAAGTTTTCCTTCAGAGGAGTCGATCTTGATGCTCTTCTCGACATG 167 Query 106 CCCACTGATGATCTTGTCAAGCTCTTCCCTGCCCGTATAAGAAGAAGGATGAGTAGAGGA 165 | |||||||||||||||||||| |||||| ||||||| | |||||| | ||||||| Sbjct 168 TCTACTGATGATCTTGTCAAGCTTTTCCCTTCCCGTATCCGTAGAAGGTTCTCTAGAGGA 227 Query 166 TTGACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAA-TTAGAAGCACC 224 ||||||||||||||||||||| | ||||||||| |||| ||||||||| || |||||||| Sbjct 228 TTGACGAGGAAGCCTATGGCTTTGATCAAGAAACTGCGGAAAGCGAAAATT-GAAGCACC 286 Query 225 AGCTGGTGAGAAGCCAGAAGTAGTGAGAACACATCTAAGGAACATGGTGATTATGCCTGA 284 |||||| |||||||||| || ||||||||| || |||||||||||| | ||| ||||||| Sbjct 287 AGCTGGAGAGAAGCCAGCAGCAGTGAGAACCCACCTAAGGAACATGATCATTGTGCCTGA 346 Query 285 AATGATTGGAAGCATCATCGGTGTGTACAACGGAAAGACTTTTAACCAAATCGAGATCAA 344 ||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 347 AATGATTGGAAGCGTCATCGGTGTTTACAATGGAAAGACTTTTAACCAGGTCGAGATCAA 406 Query 345 GCCTGAGATGATTGGACATTACCTTG-CTGAATTCTCTATCTCGTACAAGCCAGTTAAGC 403 || |||||||||||||||||| ||| |||| || || ||||| || ||||| ||||||| Sbjct 407 ACCAGAGATGATTGGACATTAC-TTGGCTGAGTTTTCAATCTCATATAAGCCTGTTAAGC 465 Query 404 ACGGCAGGCCCGGTCAAGGTGCTACACACT-CCTCTAGGTTTATCCCTCTCAAGTGA 459 | || ||||| ||| |||||||| || | |||| || |||||||||||||||||| Sbjct 466 ATGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGATTTATCCCTCTCAAGTGA 521 > AT5G43640.1 | Symbols: | Ribosomal protein S19 family protein | chr5:17531302-17532370 FORWARD LENGTH=450 Length=450 Score = 436 bits (236), Expect = 6e-122 Identities = 366/428 (86%), Gaps = 12/428 (3%) Strand=Plus/Plus Query 38 TTGCGAAGAAGAGAACGTTCAAAAAGTTTTCCTTCAAAGGAGTCGATCTCGATGCTCTTC 97 ||| ||| |||||||| |||||||||||||| |||| |||||||||||||||||| |||| Sbjct 29 TTGTGAAAAAGAGAACCTTCAAAAAGTTTTCTTTCAGAGGAGTCGATCTCGATGCGCTTC 88 Query 98 TTGACATGCCCACT-GATGATCTTGTCAAGC-TCTTCCCTGCCCGTATAAGAAGAAGGAT 155 | |||||| ||| | || ||||||||||| | | ||| | ||||||| | |||||| | Sbjct 89 TCGACATGTCCA-TCGAAGATCTTGTCAAACAT-TTCAGTTCCCGTATTCGCAGAAGGTT 146 Query 156 GAGTAGAGGATTGACGAGGAAGCCTATGGCTCTCATCAAGAAATTGCGCAAAGCGAAATT 215 |||||||||||| || || ||||||||| | || ||||||||||||||||||||| | Sbjct 147 TTCTAGAGGATTGACCAGAAAACCTATGGCTTTGATTAAGAAATTGCGCAAAGCGAAAAT 206 Query 216 AGAAGCACCAGCTGGTGAGAAGCCAGAAGT-AGTGAGAACACATC-TAAGGAACATGGTG 273 || |||||||||||||||||||||| | | |||||||||||| | | ||||||||| | Sbjct 207 GGAGGCACCAGCTGGTGAGAAGCCAGCA-TCAGTGAGAACACA-CTTGAGGAACATGATC 264 Query 274 ATTATGCCTGAAATGATTGGAAGCATCATCGGTGTGTACAACGGAAAGACTTTTAACCAA 333 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 265 ATTGTGCCTGAAATGATTGGAAGCATCATTGGTGTGTACAACGGAAAGACTTTTAACCAA 324 Query 334 ATCGAGATCAAGCCTGAGATGATTGGACATTACCTTG-CTGAATTCTCTATCTCGTACAA 392 ||||||||||||| |||||||||||||||||| ||| |||| ||||| ||||| ||||| Sbjct 325 GTCGAGATCAAGCCGGAGATGATTGGACATTAC-TTGGCTGAGTTCTCAATCTCATACAA 383 Query 393 GCCAGTTAAGCACGGCAGGCCCGGTCAAGGTGCTACACACT-CCTCTAGGTTTATCCCTC 451 || || |||||||| ||||| ||| |||||||| || | |||| ||||||||||||| Sbjct 384 ACCGGTAAAGCACGGTAGGCCTGGTGTTGGTGCTAC-CAATTCCTCCAGGTTTATCCCTC 442 Query 452 TCAAGTGA 459 |||||||| Sbjct 443 TCAAGTGA 450 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21866470815 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5