BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892883
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09780.1 | Symbols: | Transcriptional factor B3 family prot... 1149 0.0
> AT5G09780.1 | Symbols: | Transcriptional factor B3 family protein
| chr5:3036956-3038484 REVERSE LENGTH=927
Length=927
Score = 1149 bits (622), Expect = 0.0
Identities = 842/940 (90%), Gaps = 47/940 (5%)
Strand=Plus/Plus
Query 1 ATGGCTAGTAACCCTGATTTTCTTTGGTGCAAAGAAGAGAGGAAGCAGGAAAGCTTCGTC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCAAGTAACCCTGATTTTCTTTGGTGCAAAGAAGAGAGGAAGCAGGAAAGCTTCTTC 60
Query 61 AAACTTCTTAAGCATTTCGACATGTCTTCAGAGAACACGCGAGCAATTCCTTACGACTTT 120
||| ||||||||| || |||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 61 AAAGTTCTTAAGCGTTCCGACATGTCTTCAGAGGACACGCGAGCGATTCCGTACGACTTT 120
Query 121 GTGAGAAACTTCTCTGACAATGAGCTCTCCGGAAACATGAAGATAAGAGTGCAATGGGGA 180
|||| |||||||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 121 GTGATAAACTTCTCTGACAATGAGCTCTCCGGAGACATGAAGTTCAGAGTGCAATGGGGA 180
Query 181 AACTCTTGGAAAGTAAAAATCTCCAAGAACCCGAGGTTCTACTTCATGGAGAAGTCTGGA 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AACTCTTGGAAAGTAAAAATCTCCAAGAACCCGAGATTCTACTTCATGGAGAAGTCTGGA 240
Query 241 TGGGAGACGTTTGTGAGAGACAATGCCTTGGGAGACTACGAGTTTCTTACCTTCACTCAC 300
||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 TGGGAGAAGTTCGTGATAGACAATGCCTTGGGAGACCACGAGTTTCTTACCTTCACTCAC 300
Query 301 AAAGGAAAGATGAGCTTCACTGTGAACATCTTCAACAAAGATGGCAAGGAGATGATGCAA 360
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AAAGGACAGATGAGCTTCACTGTGAAAATCTTCAACAAAGATGGCAAGGAGATGATGCAA 360
Query 361 CCTCCGCAATCCAGAGCCTTTTTGGCTTCTTCTAGTCGTATCAAAACAGAACAAGATGTC 420
||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||
Sbjct 361 CCTCCGCAATCCAGAGCCTCTTTCGCTTCTTCTAGTCGTGTCAAAACAGAACAAGATGTC 420
Query 421 AAGA--G-GGAAGAGGTGTTGGTGTCTTCTGACTCGAGTTCTCGTGGCCCGACAACAGCA 477
|||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 AAGAGGGAGGAAGAGGTGTTGGTGTCTTCTGACTCGAGGTCTCGTGGCCCGACAACAGCA 480
Query 478 GCTGTATCTAATGGTAATGGAGAAGGCATG-TACAAAAGGAAGCTCAACTTT-GG--GAA 533
|||| | || |||| ||| ||||| | ||||||||||||||||||||| || |||
Sbjct 481 GCTG-A---AA--CTAATAGAGGAGGCA-GCTACAAAAGGAAGCTCAACTTTGGGAAGAA 533
Query 534 G--A----A-G--A---AAGC-T-------G-C-G-GA-AACCCAAAATTCCAAGAGGAC 569
| | | | | || | | | | | || ||||||||||||||||||||
Sbjct 534 GAAAGCTGAGGAAACCCAAACTTACAAGAGGACTGAGAGGACCCAAAATTCCAAGAGGAC 593
Query 570 TGAGAGAGTGGTTAGT-AGGCAGAGAGTTTATGCAGGCGCACCTTCCTCTTCTGTTGCAG 628
||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 594 GGAGAGAGTGGTTAGTAAGG-AGAGAGTTTATGCAGGCGAACCTTCCTCTTCTGTTGCAG 652
Query 629 AATTCAACATCTTTATCTCGAAATCATACATAAAATCCCTGGCGATCCCGACAA-CTTTT 687
|||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 653 GATTCAAAATCTTTATCTCGAAATCATACATCAAATCCCTGGCGATCCCGA-AACCTTTT 711
Query 688 GCAAATGATTATATGCCGAAGGAGAAAACAATGGTCAAGATCCATCATCCAGATGGGAAG 747
| || |||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 712 G-GAA--ATTATATGCCGAAGGAGAAAACAAGGGTCAAGATCCATCATCCAGATGGGGAG 768
Query 748 AAGTCATGGAATGTTGCTTTTGTGGTAAAAAAGAAGGGTCACATTTTCTCTGGTGGATGG 807
||| ||||||| |||| ||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 769 AAGACATGGAAGGTTGTTTTTGTGGTAAAAGAGAGGGGTCAAATTTTCTCTGGTGGATGG 828
Query 808 AAATGTTTGTGTAGGGAGTATCCTGTTGTTTTTGGGGACACTTGCAAATTCACACTCATC 867
||| ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 829 AAACGTTTGTGCAAGGAGTATCCTGTTGTTTTTGGGGACACTTGCAAATTCACCCTCATC 888
Query 868 AAACCA-TACGAGCTGCTTCTAGCTGTGTCAAGGCCCTAA 906
| |||| | |||||||||||||| ||| |||| ||| |||
Sbjct 889 ACACCACT-CGAGCTGCTTCTAGTTGTCTCAAAGCCATAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5