BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892891
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09850.1 | Symbols: | Transcription elongation factor (TFII... 1543 0.0
> AT5G09850.1 | Symbols: | Transcription elongation factor (TFIIS)
family protein | chr5:3063251-3065889 REVERSE LENGTH=1967
Length=1967
Score = 1543 bits (835), Expect = 0.0
Identities = 1017/1098 (93%), Gaps = 39/1098 (4%)
Strand=Plus/Plus
Query 1 ATGGATTTGGACGATTTCCGATCGGTTATGGATAACGCAGGTGTTGATGTTTGGACATTT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATGGATTTGGATGATTTCCGATCGGTTATGGATAACGCAGGTGTTGATGTTTGGACATTT 728
Query 61 ATCGATACGGCGATTCTCGTTGCGTCTCTTGACTATGGTCAAGAGCTCAAGCGTCGGAGA 120
||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 729 ATCGATACGGCGATTCTTGTTGCGTCTCTTGACTATGGTCAAGAACTGAAACGTCGGAGA 788
Query 121 GATAACATCGTCGAGCGTCTCTACGCTACGTCCATGGCTAACAAGTGTAGAAACTGCGAT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 789 GATAACATCGTCGAGCGTCTCTACGCTACGTCGATGGCTAACAAGTGTAGAAACTGCGAT 848
Query 181 TTTGGCGGCGGAGGTAGCGTTACGGAGGCGGCGGTTGGTAGGG-T--TAATGGGAGGGTT 237
||||||||||| |||| |||||||||||||||| ||||||||| | |||||||||||||
Sbjct 849 TTTGGCGGCGGTGGTAACGTTACGGAGGCGGCGATTGGTAGGGTTAATAATGGGAGGGTT 908
Query 238 CACGAGGAGACGGAGGAGGAAGATGAAGAAGCTGCAGGagcagcagcagcagcagAAGAA 297
||||||||||||||||||||||||||||||| | || | |||||||||||| |||||||
Sbjct 909 CACGAGGAGACGGAGGAGGAAGATGAAGAAG--G-AGTAACAGCAGCAGCAGAAGAAGAA 965
Query 298 GTAAGAGAGAAATCTGTTAATGTTGAAGACGATGACGATTTCGATCCCTTTGCTGGTTTG 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GTTAGAGAGAAATCTGTTAATGTTGAAGACGATGACGATTTCGATCCCTTTGCTGGTTTG 1025
Query 358 TTTGATGATGAGCAGAAGAGTATTCTTGAAATCAAGGAGAAACTTGAAGATCCTGATCTG 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1026 TTTGATGATGAGCAGAAGAGTATTGTTGAAATCAAGGAGAAACTTGAAGATCCTGATCTG 1085
Query 418 TCTGAAGAATCTTTAGTTGAGTTGCTTCAGAATCTGGAAGATATGGACATAACATTCCAA 477
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1086 TCTGAAGAATCTTTGGTTGAGTTGCTTCAGAATCTGGAAGATATGGATATAACATTCCAA 1145
Query 478 GCTCTTCAGGAAACTGATATTGGGAGGCATGTGAATAGAGTTCGGAAGCATCCATCTAAC 537
|||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||
Sbjct 1146 GCTCTTCAGGAAACTGATATTGGGAGGCATGTGAATCGAGTTCGGAAGCATCCTTCGAAC 1205
Query 538 AATGTTCGAAGATTAGCTAAACAGCTTGTCAAAAAATGGAAGGAAACAGTTGACGAATGG 597
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1206 AATGTTCGAAGATTAGCTAAACAGCTTGTCAAAAAATGGAAGGAAACAGTAGATGAATGG 1265
Query 598 GTCAAATTTAACCAGCCTGGTGATCTTGAACCTCCGAGTTTGATAGAACAATCAATCTCT 657
||||||||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 1266 GTCAAATTTAACCAGCCTGGTGATCTTGAACCTCCAAGTTTGATAG--C---CGAT---- 1316
Query 658 TCCAATGTAGCCGATGAGGATTCACCGGTGCAGAAAGCTCTCCATAACGGTAATCGCCAA 717
| || ||| | ||||||||||||||||||| ||||| |||| |||||||
Sbjct 1317 ------G-AG--GAT-----T-CACCGGTGCAGAAAGCTCTTCATAATGGTAGTCGCCAA 1361
Query 718 CAGGTGCCTGATTTCGGATATTCACCGGTTCCTCAGAATGGGTATTCCAGTTCAAGCAAG 777
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 CAGGTCCCTGATTTCGGATATTCACCGGTTCCTCAGAATGGGTATTCCAGTTCAAGCAAG 1421
Query 778 AACAGTTACATTTCCGAGCCAGAGAGAAAACCAAGACCTGTTACTGCTGCTGCTCCTCCA 837
|||||| ||||| | |||||||| |||||||||||||||||| ||| | ||| |
Sbjct 1422 AACAGTAACATTACTGAGCCAGAAAGAAAACCAAGACCTGTT---GCT-C--CTCA---A 1472
Query 838 CCTAGGAGAGAATCTCCTTCTCCGGCTAAACCTTCTCGCCCTTCTCCTTCTCAACAAACC 897
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1473 CCTAGGAGAGAATCTCCTTCTCCAGCAAAACCTTCTCGCCCTTCTCCTTCTCAACAAACC 1532
Query 898 ATTCCGAGGGACAAGGAGCATAAGGAAGTTGATTTCGACACAGCCCGGAAAAGGCTACAA 957
|||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1533 ATTCCGAGGGACAAAGAGCATAAAGAAGTTGATTTCGACACGGCCAGGAAAAGGCTACAA 1592
Query 958 CAAAACTACAGACAAGCCGAGAATGCAAAAAAGCAAAGGACTATACAAGTGATGGACATT 1017
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1593 CAAAACTACAGACAAGCCGAGAATGCAAAAAAGCAAAGGACTATACAGGTGATGGACATT 1652
Query 1018 CATGAGATCCCTAAACCTAAGAAAGGTGGATTTTTCCCAAGAAAAGGCGGTAGTTCTCAA 1077
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1653 CATGACATTCCTAAACCTAAGAAAGGTGGATTTTTCCCAAGAAAAGGCGGGAGTTCTCAA 1712
Query 1078 GGTGGTAGACACTGGTAA 1095
||||||||||||||||||
Sbjct 1713 GGTGGTAGACACTGGTAA 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5