BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892895
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:3081... 2296 0.0
> AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:3081442-3085264
REVERSE LENGTH=1873
Length=1873
Score = 2296 bits (1243), Expect = 0.0
Identities = 1477/1587 (93%), Gaps = 27/1587 (2%)
Strand=Plus/Plus
Query 1 ATGGATTTTGACGAGTACGAGTACCTTGAGAAGACGGTGGAGGAAGGAGATGGGTCAAAT 60
||||| |||||||| ||||||||||| ||||||||||| |||||||||| |||||| |||
Sbjct 86 ATGGAGTTTGACGAATACGAGTACCTGGAGAAGACGGTTGAGGAAGGAGCTGGGTCGAAT 145
Query 61 Aagaacaaggaatcgagtgggaacgagaagagcgagaggagttacagaaagagagaagga 120
||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 146 AAGAAAAAGGAAGAGAGTGGGAACGAGAGGAGCGAGAGGAGTTACAGAAAGAGAGAAGGA 205
Query 121 ggagagaggcatgaggaagaaggCGGTGACGAAGAGCGAGG-TAGCAGTCGGAGTAAGAA 179
||||||||||| | ||||||||| ||||| |||||||| || ||||||||||||||||||
Sbjct 206 GGAGAGAGGCAGGGGGAAGAAGGAGGTGAAGAAGAGCG-GGTTAGCAGTCGGAGTAAGAA 264
Query 180 GTCTCGCGgagacggtgaagagaac------ggt-------a-----agagagagaggca 221
||||||||||||||| ||||||||| ||| | |||||||||||||
Sbjct 265 GTCTCGCGGAGACGGCGAAGAGAACGGTGGTGGTAAGAGGGATCGGGAGAGAGAGAGGCA 324
Query 222 taggagcagcagagataaggatcgagagagggataaggttagagaaggatcgagagataa 281
||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||
Sbjct 325 TAGGAGCAGCAGAGACAAGGATAGGGAGAGGGATAAGGTTAGAGAAGGATCGAGAGATAA 384
Query 282 agagagcgatcgggagaggagtagcaaggagagagataggagcgatagggacaaaccccg 341
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 385 AGAGAGCGATCGAGAGAGGAGTAGCAAGGAGAGAGATAGGAGCGATAGAGACAAACCCCG 444
Query 342 agacagagagagaagagagagggagaggaggagcagcagtagatctcggagggaggagag 401
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 445 AGACAGAGAGAGAAGAGAGAGGGAGAAGAGGAGCAGCAGTAGATCTCGGAGGGAAGAGAA 504
Query 402 ggaACGTGAAGTAGTGGAAAGAGGAAGCAGGAGACACAAGGACAAGAAAGATGAGCCTGA 461
||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 505 GGAACCCGAAGTAGTGGAAAGAGGAAGCAGAAGACACAGGGACAAGAAAGATGAGCCTGA 564
Query 462 AGCAGATCCAGAGAGAGATCAAAGAACCGTTTTTGCATATCAGATGCCTCTTAAAGCTAC 521
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 565 AGCAGATCCAGAGAGAGATCAAAGAACTGTTTTTGCATATCAGATGCCTCTTAAAGCTAC 624
Query 522 CGAGAGAGATGTTTATGAGTTCTTCTCCAAAGCGGGCAAGGTGAGGGACGTGCGATTGAT 581
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 625 GGAGAGAGATGTTTATGAGTTCTTCTCCAAAGCGGGCAAGGTGAGGGATGTGCGATTGAT 684
Query 582 CATGGACAGAAATTCAAGACGATCAAAGGGAGTCGGGTATATTGAGTTTTATGATGTGAT 641
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 685 CATGGACAGAAATTCAAGACGATCAAAAGGCGTCGGGTATATTGAGTTTTATGACGTGAT 744
Query 642 GTCAGTTCCAATGGCCATAGCTCTGTCTGGACAACCGTTTCTTGGACAACCTGTGATGGT 701
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 745 GTCAGTTCCAATGGCCATAGCTCTGTCTGGACAACTGTTTCTTGGACAACCTGTGATGGT 804
Query 702 TAAGCCCTCTGAAGCTGAAAAGAATTTGGCTCAATCT-A-A-CACTACACCAGGTGGTAC 758
||||||||||||||||||||||||| |||| |||||| | | |||||| ||||||||
Sbjct 805 TAAGCCCTCTGAAGCTGAAAAGAATCTGGCCCAATCTAACAGCACTACGGTTGGTGGTAC 864
Query 759 TGGCCCTGTAGATAGGAAACTTTATGTGGGAAATTTGCATTTCAACATGACAGAATTACA 818
||||||| |||||||||||| |||||||| || |||||||||||||| | ||| | ||
Sbjct 865 AGGCCCTGCAGATAGGAAACTCTATGTGGGTAACCTGCATTTCAACATGTCGGAACTGCA 924
Query 819 GCTTAGACAGATTTTTGAGGCATTTGGTCCCGTTGAGCTTGTTCAGCTACCACTTGATCC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GCTTAGACAGATTTTTGAGGCATTTGGTCCCGTTGAGCTTGTTCAGCTACCACTTGATCC 984
Query 879 TGAGACTGGGCAGTGCAAAGGTTTTGGATTTATTCAGTTTGCTCAACTTGAACATTCAAA 938
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 985 TGAAACTGGGCAGTGCAAAGGATTTGGATTTATTCAGTTTGTTCAACTTGAACATTCAAA 1044
Query 939 GGCAGCACAAATTTCCTTAAATGGGAAGCTGGAGATTGCTGGTAGGACAATCAAGGTTTC 998
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1045 GGCAGCACAAATTGCCTTAAATGGAAAGCTGGAGATTGCTGGTAGGACAATCAAGGTTTC 1104
Query 999 CTCTGTCTCTGATCATATTGGTACACAAGATGCTGCTCCAAAATCTGCTGATTTTGATGA 1058
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1105 TTCCGTCTCTGATCATATTGGTACACAAGATTCTGCTCCAAAATCTGCTGATTTTGATGA 1164
Query 1059 TGATGATGGAGGTGGACTGGCTTTAAATGCACAATCTAGGGCTCTGCTTATGCAGAAGCT 1118
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1165 TGATGATGGAGGTGGACTGGCTTTAAATGCACAATCTAGGGCTATGCTTATGCAGAAGCT 1224
Query 1119 GGATCGTTCAGGTATCGCGACGAGCATTGTGGGGTCTCTTGGAGTACCAGGGCTAAATGG 1178
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 1225 GGATCGTTCAGGTATCGCTACAAGCATTGTGGGCTCTCTTGGAGTACCAGGGCTAAATGG 1284
Query 1179 AGCAACCTTTAATCAACCAGGCATAAATCCTAGTTTCCCAACACCAGTGCTTCCGACAAC 1238
|||| | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1285 AGCAGCGTTTAATCAACCAGGCATGAATCCTAGTTTCCCAACATCAGTGCTTCCGACAAC 1344
Query 1239 AGCAATCCCTTCTTTGGTCAATGAACCTGTTGGTCAGCCAAGTGAATGCCTTTTATTGAA 1298
||||||||||||||| |||||||||| |||||||| |||||| ||||||||| |||||||
Sbjct 1345 AGCAATCCCTTCTTTTGTCAATGAACATGTTGGTCTGCCAAGCGAATGCCTTCTATTGAA 1404
Query 1299 AAACATGTTTGATCCTGCAACCGAGACGGAACGCGA-CTTTGA-CTTTGAAATCAGAGAA 1356
|| |||||||||||||||||||||||||||| | | |||||| ||| |||||||||||
Sbjct 1405 GAATATGTTTGATCCTGCAACCGAGACGGAAC-CAAACTTTGATCTT-GAAATCAGAGAC 1462
Query 1357 GACGTTGAGGATGAATGTTCAAAGTATGGCGAAGTCAATCATATATACGTAGACAAGAAC 1416
||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1463 GACGTTGCGGATGAATGTTCAAAGTATGGCCCAGTCAACCATATATACGTAGACAAGAAC 1522
Query 1417 AGTGCGGGGTTTGTGTATCTGAGGTTTCAATCAGTGGAGGCGGCAGTAGCAGCTCAAAGA 1476
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1523 AGTGCGGGGTTTGTGTATCTGAGGTTTCAATCAGTGGAGGCAGCAGCAGCAGCTCAAAGA 1582
Query 1477 GCAATGCACATGAGATGGTTTGCACAAAAGATGATATCTGCAACTTTCATGCCTCCTCAT 1536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 GCAATGCATATGAGATGGTTTGCACAAAAGATGATATCTGCAACTTTCATGCCTCCTCAT 1642
Query 1537 GAATATGCAGCCAAAGCCAAGGCCTGA 1563
||||||| |||||||||||||||||||
Sbjct 1643 GAATATGAAGCCAAAGCCAAGGCCTGA 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77158237665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5