BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg892908
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09978.1 | Symbols: PEP7 | elicitor peptide 7 precursor | ch... 322 1e-87
> AT5G09978.1 | Symbols: PEP7 | elicitor peptide 7 precursor |
chr5:3120713-3121864 FORWARD LENGTH=561
Length=561
Score = 322 bits (174), Expect = 1e-87
Identities = 245/277 (88%), Gaps = 13/277 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGGAGAAGGAAGAAGAGAAGATGGAGATAATTGCTCTTATCTCTGCATCCCTTTT 60
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 16 ATGGAGGGAGAGGGAAGAAGAGAAGATGGAG---ATTGCTCTTATCTCTGCATCCCTTTT 72
Query 61 AACTTCATCCGCGATATCTTCCGATCGTTCTT--CT-GGAGTCTACCAACT-CCTCCTGA 116
|||| ||||||||||||||| | ||||||||| || || || | || |||||||
Sbjct 73 AACTCCATCCGCGATATCTTTCAATCGTTCTTCACTAGGTTTC-GCGGTCTAACTCCTGA 131
Query 117 TAATTCTCCGGTGAAGATATCACAAGAAGAAGAGGAAGAGACAGATGTTGTGAATGTGAC 176
|||||||||||||| |||||||||||||| ||||||||||||||| || |||||| | ||
Sbjct 132 TAATTCTCCGGTGACGATATCACAAGAAGTAGAGGAAGAGACAGAGGTAGTGAATAT-AC 190
Query 177 TTCAAGGAGTGTGGTGTCGGGGAACGTTGCAGCGCGAA-GGAGTAAGCAGCAAACGAGTT 235
| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 191 --CGAGGAGTGTGGTGTCGGGGAACGTTGCAGCGCGAAAGG-GTAAGCAGCAAACGAGTT 247
Query 236 CCGGGAAGCGTGGAGGTACCAACAAGGCACCTTCCTA 272
|||||||| |||||||||||||| |||||||||||||
Sbjct 248 CCGGGAAGGGTGGAGGTACCAACTAGGCACCTTCCTA 284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5