BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892951

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10420.1 | Symbols:  | MATE efflux family protein | chr5:327...   769    0.0  


> AT5G10420.1 | Symbols:  | MATE efflux family protein | chr5:3273553-3276490 
REVERSE LENGTH=1495
Length=1495

 Score =  769 bits (416),  Expect = 0.0
 Identities = 462/484 (95%), Gaps = 4/484 (1%)
 Strand=Plus/Plus

Query  5     GAGCTGGTAATGGCAAAGGAGCAAGATTTGCAACGATTGTGTCAATCACACTATCGTTAA  64
             ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct  989   GAGCTGGTAATGGCAAAGGGGCAAGATTTGCAACGATTGTTTCAATCACACTATCGTTAA  1048

Query  65    TGGTTGGATTATTCTTCACAGTGTTCATAGT-ATTTCTCCATGACCAAATCGGTTCGATC  123
             || |||||||||||||||||||  |||| || |||| | || ||||||||||| ||||||
Sbjct  1049  TGATTGGATTATTCTTCACAGTCATCATTGTAATTT-TTCACGACCAAATCGGCTCGATC  1107

Query  124   TTTTCGTCAAGTGAAGCTGTCCTAAACTCAGTCGATAATCTTTCTGTTCTATTAGCCTTC  183
             ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  1108  TTTTCGTCAAGTGAAGCTGTCCTAAACGCAGTCGATAATCTTTCTGTTCTCTTAGCCTTC  1167

Query  184   ACAGTTCTTCTCAATAGTGTGCAACCAGTTCTTTCCGGTGTTGCTGTTGGTTCGGGTTGG  243
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1168  ACGGTTCTTCTCAATAGTGTGCAACCAGTTCTTTCCGGTGTTGCTGTTGGTTCGGGTTGG  1227

Query  244   CAATCATACGTGGCATATATCAATTTGGGATGCTACTACCTTATCGGGCTTCCGTTTGGG  303
             ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  1228  CAATCGTACGTGGCATATATTAATTTGGGATGTTACTACCTTATCGGGCTTCCGTTTGGG  1287

Query  304   CTTACTATGGGCTGCG-TTTTCAAATTTGGAGTCAAGGGAATATGGGCCGGTATGATATT  362
             |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1288  CTTACTATGGGCTG-GATTTTCAAATTTGGAGTCAAGGGAATATGGGCCGGTATGATATT  1346

Query  363   TGGAGGAACCGCAATTCAAACGTTGATATTGATTATCATCACTACAAGATGTGACTGGGA  422
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1347  TGGAGGAACCGCAATTCAAACGTTGATATTGATTATCATCACTACAAGATGTGACTGGGA  1406

Query  423   CAATGAGGCACATAAAGCAAGTGTGCGCATTAAAAAATTGTTGGTCTCGGACGCAAGAAA  482
             |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct  1407  CAATGAGGCACATAAATCAAGTGTGCGCATTAAAAAATGGTTGGTCTCGGACGCAGGAAA  1466

Query  483   CTGA  486
             ||||
Sbjct  1467  CTGA  1470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5