BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg892980

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01800.1 | Symbols:  | COP1-interacting protein-related | ch...   182    4e-45
  AT4G00580.1 | Symbols:  | COP1-interacting protein-related | ch...   165    4e-40
  AT1G56100.1 | Symbols:  | Plant invertase/pectin methylesterase...   106    3e-22


> AT2G01800.1 | Symbols:  | COP1-interacting protein-related | 
chr2:343766-345254 REVERSE LENGTH=915
Length=915

 Score =  182 bits (98),  Expect = 4e-45
 Identities = 118/128 (92%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  425  TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG  484
            ||||||| |||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  740  TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG  799

Query  485  AGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCAACACTCCGACTAAAGTAGATGCTC  544
            |||||||||| |||||||||||| ||||||||| ||| ||||||||||||| ||||| ||
Sbjct  800  AGAAGCCTAAAAAGAAAAAAAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTC  859

Query  545  TAGTTGCT  552
            ||||||||
Sbjct  860  TAGTTGCT  867


> AT4G00580.1 | Symbols:  | COP1-interacting protein-related | 
chr4:248713-250258 FORWARD LENGTH=954
Length=954

 Score =  165 bits (89),  Expect = 4e-40
 Identities = 116/129 (90%), Gaps = 2/129 (2%)
 Strand=Plus/Plus

Query  425  TTGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT  483
            |||| ||| |||||||||||| |   ||||||||||||||||||||||||||||||||||
Sbjct  695  TTGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT  753

Query  484  GAGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCAACACTCCGACTAAAGTAGATGCT  543
            ||||||||||| |||||||| ||| ||||||||| ||| ||||||||||||| ||||| |
Sbjct  754  GAGAAGCCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGT  813

Query  544  CTAGTTGCT  552
            |||||||||
Sbjct  814  CTAGTTGCT  822


> AT1G56100.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:20980369-20983979 REVERSE 
LENGTH=699
Length=699

 Score =  106 bits (57),  Expect = 3e-22
 Identities = 87/100 (87%), Gaps = 7/100 (7%)
 Strand=Plus/Plus

Query  425  TTGAGAAA-GAAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAAT  481
            |||| ||| ||||||| || |  || | ||||||||||||||||||||||||||||||||
Sbjct  440  TTGA-AAACGAAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAAT  496

Query  482  CTGAGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCAA  521
            ||||||||||||| ||||||||  || ||||||||| |||
Sbjct  497  CTGAGAAGCCTAAAAAGAAAAAG-GAGCAAAGAAAGTCAA  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5