BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893001
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10870.1 | Symbols: ATCM2, CM2 | chorismate mutase 2 | chr5:... 1192 0.0
> AT5G10870.1 | Symbols: ATCM2, CM2 | chorismate mutase 2 | chr5:3430546-3432462
REVERSE LENGTH=1041
Length=1041
Score = 1192 bits (645), Expect = 0.0
Identities = 748/799 (94%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGAGTCGTCGAATCGGATTCGAGTTCGGGTTGTTCCAATGTACTGAGTCTTGAC 60
|||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 99 ATGGCAAGAGTCTTCGAATCGGATTCGGGTTCTGGTTGTTCCAATGTACTGAGTCTTGAC 158
Query 61 TCGATTAGAGAATCGTTGAATAGACAAGAAGACACCATCGTCTTCAGCTTGATAGAGAGA 120
| || ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 159 TTAATCAGAGAATCGTTGATTAGGCAAGAAGACACCATCGTCTTCAGCTTGATCGAGAGA 218
Query 121 GCTAAGTTTCCACTCAATTCCCCTGCATTCGAAGAATCTCGTTGTCTAGATTCTGGAAAT 180
|||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |
Sbjct 219 GCTAAGTTTCCACTCAATTCTCCTGCTTTCGAGGAATCTCGTTGTCTAGATTCTGGAAGT 278
Query 181 TCCTCTTCTCTCACTGAGTATTTT-GTCAGAGAGATAGAAACCATCCAAGCTAAGGTAGG 239
| ||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||
Sbjct 279 TTCTCTTCTCTCACTGAGT-TTTTCGTCAGAGAGACAGAAATCATCCAAGCTAAGGTAGG 337
Query 240 AAGATATGAAAACCCGGAAGAGAATCCTTTCTTCCTAAAGAACATTCCTCACGCGGTATT 299
|||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 338 AAGATATGAATACCCGGAAGAGAATCCTTTCTTCCTTGAGAACATTCCTCACTCGGTTTT 397
Query 300 TCCTACGCACAAATATCCACCGGCTTTGCACCCTAAGGCTCTATCCGTTAACATAAACAA 359
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 398 TCCTACGCACAAATATCCATCGGCTTTGCACCCTAAGGCTCTATCTGTTAACATTAACAA 457
Query 360 ACATATTTGGGATGTTTACTTTAAAGAATTGCTTCCTTTGTTCGTCAAACCTGGCGATGA 419
||| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 458 ACAAATCTGGGATATTTACTTTAAAGAATTGCTTCCTTTGTTTGTCAAACCTGGCGATGA 517
Query 420 TGGCAACTATCCATCAACTGCTGCTAGTGATCTTGCGTGTTTACAAGCTCTTTCAAGAAG 479
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 518 TGGCAACTATCCATCAACTGCTGCTAGTGATCTCGCCTGTTTACAAGCTCTTTCGAGAAG 577
Query 480 GATTCACTACGGTAAATTTGTTGCCGAAGTCAAATTCAGAGATGCTCCTCAAGATTACGA 539
||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 578 GATTCACTACGGTAAATTTGTAGCTGAGGTCAAATTCAGAGATGCTCCACAAGATTACGA 637
Query 540 GCGTGCGATTCGAGCTCAGGATAGAGAGGCTTTGATGAAGCTTTTGACGTTTGAGAAAGT 599
|| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 638 GCCTGCGATTCGCGCTCAGGATAGAGAGGCTTTGATGAAGCTGTTGACGTTTGAGAAAGT 697
Query 600 AGAAGAAATGGTTAAGAAGAGAGTGCAGAAGAAAGCAGAAACGTTTGGACAAGAAGTAAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AGAAGAAATGGTTAAGAAGAGAGTGCAGAAGAAAGCAGAAACGTTTGGACAAGAAGTAAA 757
Query 660 ATGCATCACTGACTCTGGTGATGAGAGTAAGAAGAAGTATAAAGTGGATCCATTACTTGT 719
|| || | ||| || ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 758 ATTCAACTCTGGCTATGGCGATGAGAGTAAGAAGAAGTATAAAGTGGATCCATTGCTTGC 817
Query 720 CTCTCGCATCTATGGAGAATGGCTTATCCCTCTCACTAAGCTCGTTGAGGTTGAATATCT 779
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 818 CTCTCGCATCTACGGGGAATGGCTTATCCCTCTCACTAAGCTCGTTGAGGTTGAGTATCT 877
Query 780 TCTACGTCGTCTCGATTGA 798
|||||||||||||||||||
Sbjct 878 TCTACGTCGTCTCGATTGA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5