BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893002
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10890.1 | Symbols: | myosin heavy chain-related | chr5:343... 1219 0.0
> AT5G10890.1 | Symbols: | myosin heavy chain-related | chr5:3434030-3435067
REVERSE LENGTH=888
Length=888
Score = 1219 bits (660), Expect = 0.0
Identities = 837/917 (91%), Gaps = 34/917 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGAAGCAAGGGTGAGAGACGACTGTGACGCGGTGAGGATCAGAACTTCCTC---G 57
||||| ||| ||||||| |||| |||| |||| |||||||||||||||||||||| |
Sbjct 1 ATGGCGGAACCAAGGGT--GAGA-GACTCTGACACGGTGAGGATCAGAACTTCCTCGGAG 57
Query 58 GATGGTCATCATGGTGTTGGCCAATTTTCCGATTCGCCGCCACCTACGATCCATTCCGAA 117
|||| ||||||| | |||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct 58 GATGATCATCATAGAGTTGGCCAATTTTCAGATTCGCCGCCACCAACGATCCCTTCCGAA 117
Query 118 TTGCAAAGAAGGGAATTTTTGTTCAGCATTGG-ATTGAGTTGTTATTTGATACATTTGCT 176
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 118 TTGCAAAGAAGGGAATTTTTGTTCAGCATTGGCA-TGAGTTGTTATTTGATACATTTGAT 176
Query 177 TGCTACTGGTAGAGAAGAGATTCACAAGATTGTTGAGTTACGTTACGATTTAGAGAGGTT 236
||||||||||||| |||||||||||||||| |||||| ||||| |||||||||| | |||
Sbjct 177 TGCTACTGGTAGACAAGAGATTCACAAGATCGTTGAGCTACGTAACGATTTAGACAAGTT 236
Query 237 TTTGGAATGTCGAAACGAAGAACTAAGGCGAAAACAGCAAGAGTTTGTCGAGTTACGGAA 296
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 237 TTTGGAATGTCGAAACGAAGAACTGAGGCAAAAACAGCAAGAGTTTGTCGAGTTACGTAA 296
Query 297 CGATATAGAGAAGTTTTTAGAATTTCACAACGATGAATTGAGGCGAAAACAGCAAGAGTT 356
||||||| | ||||||||||| ||||||||| ||||||||||||| ||| | | |
Sbjct 297 CGATATACACAAGTTTTTAGAGTTTCACAACAATGAATTGAGGCG-AAA-A-C---A--- 347
Query 357 TCGCTTTCGGAAGCAAGAACAAACTGAAACCTCTGCATATTCCGCCACAAGTGATGTTGT 416
|| | || || | |||||||||||||||| |||||||||||||||||||||||
Sbjct 348 --GC--T----AG--AG-A-AAACTGAAACCTCTGCGTATTCCGCCACAAGTGATGTTGT 395
Query 417 AGATGGCCCTGACTCTTCTACTGATCACTATTACTCTCCTCAGATCATGGAGACATCTAT 476
||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 396 TGATGGCCCTGAATCGTCTACTGATCACTATTACTCTCCACAGATCATACAGACATCTAT 455
Query 477 GAGTGTTGGAGGTGAAGGGTCTTTGTCACATTATGTATATAAGCGAGGGGATGATTCTGG 536
||||||||||||||||||||| ||||||||||| |||||||||| || | ||||||||||
Sbjct 456 GAGTGTTGGAGGTGAAGGGTCGTTGTCACATTACGTATATAAGCTAGAGAATGATTCTGG 515
Query 537 ATGTGAAATGGATCAGCTTGAAGCTGAACTTGAAGCTGAGTTTGAGCTTCTTCAGATTGG 596
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AGGTGAGATGGATCAGCTTGAAGCTGAACTTGAAGCTGAGTTTGAGCTTCTTCAGATTGG 575
Query 597 TCA-AGACCATGAGGTTTCAAGTGAAGATGCAGAAGGATTAAGATTGGGACACGTGTGTC 655
||| | |||| |||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 576 TCATA-ACCAGGAGG-TT--AGTGAAGATGCAGAAGGATTAAGATTGGGACATGTGTGTC 631
Query 656 CAGGACTAGTGGAGGAACAACAAGGAGTGTGTCCGTATGAGCTGGAGAGAAGACTACACG 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 632 CAGGACTAGTGGAGGAACAACAAGGAGTGTGTCCGTATGAGCTGGAGAGAAGACTATACG 691
Query 716 AGCTTATGGAGACAAGACAACAAGAGGAGATAAAGGAGTTAGAGATTGCATTGGATGATG 775
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AGCTCATGGAGACAAGACAACAAGAGGAGATAAAGGAGTTAGAGATTGCATTGGATGATG 751
Query 776 CTAAACAAAGGCTTCATTTGAAGGAGAGAGAAGCTTCTTGGTGGAAAGACACTGCTTATA 835
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 752 CTAAACAAAGACTTCATTTGAAAGAGACAGAAGCTTCTTGGTGGAAAGACACTGCTTATA 811
Query 836 TAGTCTCTGAACGTATTCCAGAACCTTCTAGAATCACTTACAGCTCTCGAACTCATCCTT 895
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 812 TAGTCTCTGAACGTATTCCAGAACCTTCTAGAATCACTCACAGCTCTCGAACTCATCCTT 871
Query 896 ACCCTCTCTCAAGGTGA 912
|||||||||||||||||
Sbjct 872 ACCCTCTCTCAAGGTGA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5