BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893003
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10900.1 | Symbols: | Calcineurin-like metallo-phosphoester... 2839 0.0
> AT5G10900.1 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr5:3435949-3439297 REVERSE LENGTH=2258
Length=2258
Score = 2839 bits (1537), Expect = 0.0
Identities = 1726/1816 (95%), Gaps = 17/1816 (1%)
Strand=Plus/Plus
Query 1 ATGCCGCCTCCAGAAATTTCGAAAAGGGTTTTAGACGCGAAGCTTGAAGCTTGCAAATTC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 77 ATGCCGCCTCCAGAAATTTCGAAAAGGGTTTTAGACTCGAAGCTTGAAGCTTGCAAATTC 136
Query 61 GCATTCTTAAAGCTAAGTGCGGTCAAAACGACGAGAATGAAGAACTATAAGCAACTGCGT 120
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 137 GCATTCTTGAAGCTAAGTGCGGTTAAAACGACGAGAATGAAGAACTATAAGCAACTGCGT 196
Query 121 ACTCTGCTTATGTTGAAAGAAATATCTCGACGTGGTGCTGATCGAGACTTTCTTAAAGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 ACTCTGCTTATGTTGAAAGAAATATCTCGACGTGGTGCTGATCGAGACTTTCTTAAAGAT 256
Query 181 CCGGAAAATAGTGTAACTCGAATTCTGTGTTCGGTTTTAAAGCAAGTGGTGAGTAACTCA 240
||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 257 CCGGAGAATAGTGTAACTCGAATACTGTGTTCGGTTCTAAAGCAAGTGGTGAGTAACTCA 316
Query 241 GACCGTTCTTTAAAGTCTCTTCGTGGGTTTCAATATGAGACATTGGATGATCAAGAGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GACCGTTCTTTAAAGTCTCTTCGTGGGTTTCAATATGAGACATTGGATGATCAAGAGAAG 376
Query 301 CAACAGGTGACGAGGATGATAGCAAGTGTACAAGGAATGGGTAGTAGAAAATACGAACCA 360
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 377 CAACAAGTGACCAGGATGATAGCAAGCGTACAAGGAATGGGTAGTAGAAAATACGAACCA 436
Query 361 GAAAGTGTTGATCATCTAGAGGACATGACTGAGCCAGTGGAAATGGAGATTTATTTGGGA 420
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 437 GAAACTGTTGATCATCTAGAGGACATGACTGAGCCAATCGAAATGGAGATTTATTTGGGA 496
Query 421 AACGGAGATGATTCTGTGGGTGGGGATTTTGGTGACATTGTTTTGGAGCCAATCTCTTGG 480
||| | || || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AAC-G-GA-GA-----T-GGTGGGGATTTTGGTGACATTGTTTTGGAGCCAATCTCTTGG 547
Query 481 CCTTTAGAGTCGCAGCTAAATCTTGAATGGGTTGAGACTTTGATGGGTTTGATAAACCAG 540
||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 548 CCTTTAGAGTCACAGCTAACTCTTGAATGGGTTGAGACTTTGATGGGTTTGCTAAACCAG 607
Query 541 TTCACATGGAAGAACTTGGTTTCCGAGTTCCCTTTGATATTGCCACATTCTGTGGCT-TT 599
| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 608 TCCACATGGAAGAACTCGGTTTCCGAGTTCTCGTTGATATTGCCACATTCTGTGGCTGTT 667
Query 600 TGCTCTGGTGGAATGTGCTTCGCAGATTCTAGACAAAGAAGCCAATTGCGTTAAAATTGA 659
| |||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 668 T-CTCTGGTGGATTGTGCTTCGCAGATTCTAGAAAAAGAAGCCAATTGTGTTAAAATCAA 726
Query 660 TTGCTGTAGTGAGAATTCTAGAGTGATTGTGGTTGGGGATCTCCACGGTCAGTTACATGA 719
| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 727 TGGCTGTAGTGAGGATTCTAGAGTGATTGTGGTTGGAGATCTCCACGGTCAGTTACACGA 786
Query 720 TCTCCTCAAAATCTTTGATCAATCAGGAAGGCCTTCACAGAATCAATGTTTTGTGTTCAA 779
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 787 TCTCCTCAAAATCTTTGATCAATCAGGAAGGCCTTCACAGAATCAATGCTTTGTATTCAA 846
Query 780 TGGTAATTACATTGGTCGAGGTTCTTGGAGCCTAGAAGTGTTCTTGGTTCTCTTAGCCTG 839
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 847 CGGTAATTACATTGGTCGAGGTTCTTGGAGCCTAGAAGTGTTCCTGGTTCTCTTAGCTTG 906
Query 840 GAAGATTCTGATGCCTGAGAATGTAATTTTACTTCGAGGAAGCTCTGAAACAAGAATTTC 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 907 GAAGATTATGATGCCTGAGAATGTAATTTTACTTCGAGGAAGCTCTGAAACAAGAGTTTC 966
Query 900 TGCAGAAGAGCTTGATTTCTTGAAAGAAATATGTGACAGATATGGTGAGCACGGTCCAAT 959
||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||
Sbjct 967 TGCAGAAGAGCTTGATTTCCTGAAAGATATATGTGATAGATACGGTGAGCACGGTCCAAT 1026
Query 960 GCTATACTCCAAGTGTATCGATTGTTTTAAAATGCTT-CCTTTGGCATCGGTCATATCAA 1018
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 1027 GTTATACTCCAAGTGTATCGATTGTTTTAAAATG-TTACCTTTGGCATCAGTCATATCAA 1085
Query 1019 ATAGCGTCTACACAACTCATGGAGGTCTCTTTCAAAGTTCG-CGGGTCCAAGAAGATAGC 1077
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||
Sbjct 1086 ATAGCGTCTACACAACTCATGGAGGTCTCTTTCAAAGTT-GTGGGGTCCACGAAGAGAGC 1144
Query 1078 GTGAATCCATCTTTGTGGTTGGGTTCTTTAGACGAACTTGACAAGATTGAGAGGAGACAA 1137
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1145 CCGAATCCATCTTTGTTGTTAGGTTCTTTAGAGGAACTTGACAAGATTGAGAGGAGACAA 1204
Query 1138 GCTGGTGAGAACGATGACGAGAATATAACTCTTAACCATGTTTTATGGTCATGTCCATGG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 GCTGGTGAGAACGATGACGAGAATATAACTCTTAACCATGTTTTATGGTCATGTCCATGG 1264
Query 1198 ATGGCTGATGGTCTGAGCGAAAGCAATTACAAGGGCCTTCTTTGGGGAGCTGATTGCACC 1257
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1265 ATGGCTGATGGTCTGAGCGAAAGCAATTACAAGGGACTTCTTTGGGGAGCCGATTGCACC 1324
Query 1258 GAGACTTTTCTACAACAGTCAAACTTAAAGATGATTATAAGATCACATGAAGGCCCCGAT 1317
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1325 GAGACTTTTCTACAACAATCAAACTTAAAGATGATTATTAGATCGCATGAAGGCCCCGAT 1384
Query 1318 GCACGAGCAGATCGAGAAGATATGGGAAACATGCTAAGCGGTTACTCGATAGATCATGAA 1377
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1385 GCACGAGCAGATCGAGAAGACATGGGAAACATGCTAAGCGGTTACTCAATAGATCATGAA 1444
Query 1378 GTAGAATCTGGAAAACTTTGCACAGTCTTCAGCGCTTCAATGTTCTCACAGGGTTCAAGA 1437
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1445 GTAGAATCTGGAAAGCTTTGCACAGTCTTCAGTGCTTCAATGTTCTCACAGGGTTCAAGA 1504
Query 1438 AACTATGAAAACGAAGGCGCATATGCTGTTCTTGAGCCTCACAACTTCACAGAACCTAG- 1496
||||||||||| |||||||||||||| ||||||||||||| |||||||||||| || |
Sbjct 1505 AACTATGAAAATGAAGGCGCATATGCGGTTCTTGAGCCTCCCAACTTCACAGAGCC-CGT 1563
Query 1497 ATTTGTTTCTTACACAGTCGAAAATGTTCCAAGGTTACACCATCAAATCATAAGTGATGG 1556
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1564 ATTTGTTTCTTACACAGTCGAAAATGTCCCAAGGTTACAACATCAAATCATAAGTGATGG 1623
Query 1557 ATCTTCAACTCAACAACAACAAATGTGGGAGAATAGAACAGGACACGGTTTTGCATCATT 1616
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1624 ATCTTCAACTCAACAACAGCAAATGTGGGAAAATAGAACAGGACACGGTTTTGCATCAAT 1683
Query 1617 GGGGATTTCTAATCCGCCTTCATGGACCGTTCCTTTGCCAAATGACCCGAGTCAGATCCT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 GGGGATTTCTAATCCGCCTTCATGGACCGTTCCTTTGCCAAATGACCCGAGTCAGATCCT 1743
Query 1677 TCAACTTCGAGAGCCTCCTCAAGTCTTTGAAGGTCTTCCTCTTCCCGACACCATCCAGGA 1736
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1744 TCAACTTCGAGAGCCTCCTCAAGTCTTTGAAGGTCTTCCTCTTCCCGACAACATCCAGGA 1803
Query 1737 GCCTCACAAATCCAACTACAACTACTTGTTTAGACTGATAAGCGCTCTCAAACAGGAGAT 1796
||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 1804 GCCTCACAAATCCAACTACGACTACTTGTTTAGACTCATAAGCGCTCTAAAACAGGAGAT 1863
Query 1797 TCAAACCAGGGTATAA 1812
|||||| |||||||||
Sbjct 1864 TCAAACAAGGGTATAA 1879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89658173370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5