BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893008

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G10946.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   289    1e-77


> AT5G10946.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 30201 Blast hits to 
17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; 
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3455607-3457306 
REVERSE LENGTH=833
Length=833

 Score =  289 bits (156),  Expect = 1e-77
 Identities = 222/251 (88%), Gaps = 15/251 (6%)
 Strand=Plus/Plus

Query  44   TTTCTCTATTTAATCACCACTTCTCTCTTTCGTTATATAGAGAGATAAAG-AAAGCAGCC  102
            ||||||||||||||   |||||||| |||||| ||||||||||||  ||| |||||||||
Sbjct  94   TTTCTCTATTTAAT---CACTTCTCACTTTCGCTATATAGAGAGA-GAAGTAAAGCAGCC  149

Query  103  GACACATGTATGCTTTGCATGAAAGAGAGAGAGAACTCTAGCACATATGAATT-GTCCCA  161
            ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||
Sbjct  150  GACACATGTATGCTTTGCATGAAAGAGAGAGTGAACTCTAGCACACATGAATTGGCCCCA  209

Query  162  ACT-CTCAACTTCAAAAGGTGAGTCAAAGTTATGCAGATTGCACTTGAATCCATGGAATA  220
            ||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  210  ACTCCT-AGCTTCAAAAGATGAGTCAAAGTTATGCAGATTGCACTTGAATCCATGGAATA  268

Query  221  AGATTGGTTTTAGTGGCGAAAAGTTTGGAGTTGATGTGCTCAAACTCTTGGGCATTATAG  280
            ||||       | ||||||||||||||||||||||||||||||| | ||||||||| |||
Sbjct  269  AGATA------A-TGGCGAAAAGTTTGGAGTTGATGTGCTCAAAATTTTGGGCATTGTAG  321

Query  281  TTTCTATGTAA  291
             | ||||||||
Sbjct  322  CTCCTATGTAA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5