BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893015
Length=2238
Score E
Sequences producing significant alignments: (Bits) Value
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1526 0.0
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindi... 1074 0.0
AT5G05720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 353 3e-96
> AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829193-2834695 FORWARD LENGTH=2643
Length=2643
Score = 1526 bits (826), Expect = 0.0
Identities = 925/971 (95%), Gaps = 14/971 (1%)
Strand=Plus/Plus
Query 1014 AGATAACTCTTCTAATCTGCCAAAATCATTCAAGCAAA-AGAGGGAGGAACAAAGGAAGG 1072
||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1087 AGATAACTCCTCTAATCTGCCAAAATCATTCAAG-AAAGAGAGGGAGGAACAAAGGAAGG 1145
Query 1073 CGTCTGAAGCTTGTGGAAACACAAAGGCTTGGAACAGTTTCTTCATGCGACCCGATACTA 1132
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1146 CGTCTGAAGCTTGTGGAAACACAAATGCTTGGAACAGTTTCTTCATGCGACCCGATACTA 1205
Query 1133 TCCTGGAAAACTTAGTCAGGTCGTATGGTGTAACAAAGAGTGAGTTACTTGACCGTGAAT 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TCCTGGAAAACTTAGTCAGGTCGTATGGTGTAACAAAGAGTGAGTTACTTGACCGTGAAT 1265
Query 1193 GCGAAGATCCTGCAGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTATGGAGACCAAAG 1252
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1266 GCGAAGATCCTGCAGTACGCCTTGCTTTGGGAGAAACAAGAGTGATTATGGAGACCAAAG 1325
Query 1253 AAGCCCTTGCTAAAGCTGGAGTACGTGTCGCCTCTTTGGAAGAATTTGCTGCACGGAAAG 1312
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1326 AAGCCCTTGCTAAAGCTGGAGTACGTGTCACCTCTTTGGAAGAATTTGCTGCACGGAAAG 1385
Query 1313 GTGATGAGAAGAACAGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCATTTGCTTCCA 1372
|||| | |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct 1386 GTGACGTGAAGAACAGAAGCAAACATATTCTCTTAGTCAAGCATTTGCCCTTTGCTTCCA 1445
Query 1373 CTGAAAAGGAACTGGCTCAAATGTTCCGAAAATTTGGAAGTCTTGACAAAATTATTCTCC 1432
||||||||||||||||||||||||| || |||||||||||||| ||||||||| ||||||
Sbjct 1446 CTGAAAAGGAACTGGCTCAAATGTTTCGGAAATTTGGAAGTCTAGACAAAATTGTTCTCC 1505
Query 1433 CTCCGACGAAGACGATGGCTTTGGTTGTTTTCCTTGAACCGGCTGAGGCACGTGCAGCTT 1492
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1506 CTCCGACTAAGACGATGGCTTTGGTTGTTTTCCTTGAAGCGGCTGAGGCACGTGCAGCTA 1565
Query 1493 TGAACGGAATGGCATACAAGCGTTACAAAGATGTTCCCCTGTATCTGGAGTGGGCTCCTC 1552
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1566 TGAACGGATTGGCATACACGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCTC 1625
Query 1553 GAGATATTCTTGAACCAAAAGCACTTGCCGATAACAAAGAAGAGAAGAGTGCTGTTGAAG 1612
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1626 GAGATATTCTTGAGCCAAAAGCACTTGCCGATAACAAAGAAAAGAAGAGTGCTGTCGAAG 1685
Query 1613 AAAATGATGCGAGAAGAGTCAACCTGGATCAGCAGGTTGGAATCTATTCGGATATAGCCG 1672
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 1686 AAAATGATGCGAGAAGAGTCAACTTAGATCAGCAGGTTGGAATCTATTCGGATATAACCG 1745
Query 1673 AGTCAAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGA 1732
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1746 AGTCAAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGGTTGAAGA 1805
Query 1733 AGCATTTGACTGGACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAG-A--TAATAAGAG 1789
|||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1806 AGCATTTGACTGGAGTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGCAGATAATAAGAG 1865
Query 1790 ATTGGAAGAGACGTCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1849
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1866 ACTGGACGAGACGTCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAG 1925
Query 1850 CGACCAGTGTCTACAGAGATCTACCAGTAGAGGGAAATGTTCTGGATGGGCATTCTTTGA 1909
||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1926 CGACCAGTGTCTACAGAGATCTACCAG--GA---AA-TGTTCTGGATGGGCATTCTTTGA 1979
Query 1910 TCTTGAGTTATTCTGAAAACAAGCGGAGTGAAACGGTTGGGGAAGGTTCAGACAAGATCA 1969
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1980 TCTTGAATTTTTCTGAAAACAAGCGGAGTGAAACGGTTGGGGAAGGTTCAGACAAGGTCA 2039
Query 1970 -AGAGAGTTGG 1979
| | ||||||
Sbjct 2040 CA-A-AGTTGG 2048
Score = 1064 bits (576), Expect = 0.0
Identities = 853/976 (87%), Gaps = 61/976 (6%)
Strand=Plus/Plus
Query 15 GTCTAGGATAATCGTTAAGAATGTTCCCAAATATGTGACAGAGGATCAACTACGAGGTAT 74
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GTCAAGGATAATCGTTAAGAATGTTCCCAAATATGTGACAGAGGATCAACTACGAGGTAT 216
Query 75 CTTTTCACG-AAAAGGAGAAATCACAGACGTGAAATTGAAGCGTTTAAGTGATGGCACAA 133
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 217 CTTTTC-GGAAAAAGGAGAAATCACAGACGTGAAATTGAAGCGTTTAAGTGATGGCAGAA 275
Query 134 GTAGACAATTTGCTTATATTGGATTTCGTAATGATCAAGAAGCTCAAGATGCTATCACTT 193
|||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 276 GTAGACAATTTGCTTATATTGGATTTCGTAGTGAACAAAAAGCTCAAGATGCTATCACTT 335
Query 194 ACTTTAACAAGTCTTTCATTGATACTCTTCGAATATCTGTTTTGCTTGCGGACCCTCCTC 253
||||||||||| ||||| ||| || || ||||||||||||| ||||||||||||| |
Sbjct 336 ACTTTAACAAGAATTTCAAACATAGTCATCAAATATCTGTTTTGGTTGCGGACCCTCCAC 395
Query 254 C---GAGGACACAAGGGAAGGCTGATGAAAAGAGTGAACATGCTTATGCTAAAGGAGACA 310
| ||||||||||||||| | | | || ||||||||||||||||||| |
Sbjct 396 CGAGGAGGACACAAGGGAA-G--G-T--------TG---ATGCTTATGCTAAAGGAGATA 440
Query 311 AAAAGATTAAGAAGAA--A-CCAGAGGCTGATCATGATCCTCAGCTTCAAGAATTTCTTC 367
|| ||||| ||||||| | ||||| | ||||||||||||||||||||||||||||||||
Sbjct 441 AACAGATTCAGAAGAAGGATCCAGAAGTTGATCATGATCCTCAGCTTCAAGAATTTCTTC 500
Query 368 ATGAGCATAAGAAGTTGAAATTCTGGTCCAATGACATGTGTATTCCTCCTTCCACCGGCA 427
|| || | | |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 501 ATCAGGAGCATAAGTTGAAATTCTGGTCCAATGACATGTGTATTCATCCTTCCAATGG-- 558
Query 428 AAGAAAAGGTCTCTCCAGTAAGTTTTTCCAATGGTGCCAAAAGATCATTCTTAGATCCTA 487
| | | | || ||| ||| ||||||||||||||||||||| |||
Sbjct 559 -TG--CTGATGAC-CC--TAA-------CAA---AGCCAAAAGATCATTCTTAGATTCTA 602
Query 488 AAAAGACTAGAAAGAATAAAGTTGGTGACGATGTTTCTGATATGGAATACTTGAAGAGTC 547
||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 603 AAAAGACTAGAAAGAGTAAAGTTGGTGATGATGTTTCTGATATGGAATACTTCAAGAGTC 662
Query 548 GGATAAAGAAAAATCTGTCGGATTCGGACAGTGATTGTGAAACTGATAGTCGTGAAGATG 607
||||||||||||| || | |||||||||||||||||| ||||||||||||||||
Sbjct 663 GGATAAAGAAAAA----TC----T-GGACAGTGATTGTGAAACCGATAGTCGTGAAGATG 713
Query 608 CAATTC-ATGTTTTTCCTATTGATGGAGAAGTTGAAGCTGACAGAGTCGACAAAgatgat 666
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 714 CAA-TCAATGTTTTTCCTATTGATGGAGAAGTTAAAGCTGACAGAGTCGACAAAGATGAT 772
Query 667 gatgatgatg--atggccatgca-atg--gatggcagtgatgatgTTCTTGACACTAGTC 721
|||| ||| |||| | | | | | |||||||||||||||||||||||| || |||
Sbjct 773 GATGGCCATGCAATGG--AGGTAGAAGCCGATGGCAGTGATGATGTTCTTGACGCTGGTC 830
Query 722 GCCTTTTCGTCCATGGCCTGCCTTACTCTA-CAGCAGAAGAAGAGCTTACGGAACATTTC 780
|||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 831 GCCTTTTCGTCCATGGCCTGCCTTACTCTACCA-CAGAAGAAGAGCTTATGGAACATTTC 889
Query 781 AGCAAATTCGGTGATATATCAGAGGTCCATCTTGTTCTTGACAAGGATACTAGAAATCCC 840
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 890 AGCAAATTCGGTGATATATCAGAGGTCCATCTTGTTCTTGACAAGGATACCAGAAGTTGC 949
Query 841 AGAGGAATGGCCTACGTCCTTTACCTGATACCGGAATCTGCAAAAAGGGCAATGGAGAAA 900
|| |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 950 AGGGGAATGGCCTTCGTCCTTTACCTGATACCGGAATCTGCAAAAATGGCAATGGATAAA 1009
Query 901 TTAGATAAGTTACCTTTCCAGGGGCGGACGTTGCATATTTTACCAGCTAAGCCCTGTGCA 960
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1010 TTAGATAAGTTACCTTTCCAGGGCCGGACGTTGCATATTTTACCAGCTAAGCCCCGTGCA 1069
Query 961 AAGTCTGCTAAACAAG 976
| ||||||||||||||
Sbjct 1070 ATGTCTGCTAAACAAG 1085
Score = 363 bits (196), Expect = 6e-99
Identities = 265/295 (90%), Gaps = 17/295 (6%)
Strand=Plus/Plus
Query 1960 GACAAGA-TCAAGAGAGTTGGGCTTCCATTGAAGACTGTGGGAAAATATGCTGGTTTTGG 2018
||| ||| ||||||||||||||||||||||||||| |||| ||||||| ||||||| ||
Sbjct 2121 GAC-AGATTCAAGAGAGTTGGGCTTCCATTGAAGAATGTGAGAAAATACGCTGGTTATGC 2179
Query 2019 TTTTGTTGAATTTGGGACAATGCAAGAAGCTTTAAACGCTAAAAAGGCATTCTCCAACAC 2078
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2180 TTTTGTAGAATTTGGGACAATGCAAGAAGCTTTAAACGCTAAAAAGGCACTCTCCAACAC 2239
Query 2079 CCATTTCTATGGACGCCAATTGGTGCTCGAGTGGGCTCATGATGAC-A-AG-A-G-AA-- 2131
|||||||||||||||||| ||||||||||||||||||| ||||||| | || | | ||
Sbjct 2240 CCATTTCTATGGACGCCATTTGGTGCTCGAGTGGGCTCGTGATGACGAGAGCATGGAAGC 2299
Query 2132 -A---A----TCTTGTGCTGCCAAGTATATGGACCAAGAAAACGATAATCCAAAGAAAAG 2183
| | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2300 GATTCAAAAATCTTGTGCTGCCAAGTATATGGGCCAAGAAAACGATAATCCAAAGAAAAG 2359
Query 2184 GAAAAGATGGACAGTTGTTGGTAGAGGTAGAGAGACGTCAAAGAAAAGGTTATAG 2238
|||||| | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2360 GAAAAGCTCGACAGTTGTTGGTAGTGGTAGAGAGACGTCAAAGAAAAGGTTATAG 2414
> AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid binding;RNA
binding | chr4:10677229-10681771 FORWARD LENGTH=2852
Length=2852
Score = 1074 bits (581), Expect = 0.0
Identities = 842/963 (87%), Gaps = 38/963 (4%)
Strand=Plus/Plus
Query 1022 CTTCTAATCTGCCAAAATCATTCAAGCAAAAGAGGGAGGAACAAAGGAAGGCGTCTGAAG 1081
||||||| ||||||||| |||||||||| ||||| ||||||||||| ||||| |||||||
Sbjct 1401 CTTCTAACCTGCCAAAAACATTCAAGCAGAAGAGAGAGGAACAAAGAAAGGCATCTGAAG 1460
Query 1082 CTTGTGGAAACACAAAGGCTTGGAACAGTTTCTTCATGCGACCCGATACTATCCTGGAAA 1141
|| ||||| | |||||||||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 1461 CTGGTGGAGATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAA 1520
Query 1142 ACTTAGTCA-GGTCGTATGGTGTAA-CAAAGAGTGAGTTACTTGACCGTGAATGC-GAAG 1198
|| |||||| ||| ||||||||||| | |||||||||||||||||||||||| || ||||
Sbjct 1521 ACATAGTCAGGGT-GTATGGTGTAAGC-AAGAGTGAGTTACTTGACCGTGAA-GCTGAAG 1577
Query 1199 ATCCTGCAGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTATGGAGACCAAAGAAGCCC 1258
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1578 ATCCTGCTGTACGCCTTGCTTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCC 1637
Query 1259 TTGCTAAAGCTGGAGTACGTGTCGCCTCTTTGGAAGAATTTGCTGCACGGAAAGGTGATG 1318
|||| |||||||||||| ||| | ||||||||| |||||||| || |||| |||||||
Sbjct 1638 TTGCGAAAGCTGGAGTAAATGTTACTTCTTTGGAAAAATTTGCTACAAGGAATGGTGATG 1697
Query 1319 AGAAGAACAGAAGCAAACATATTCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAA 1378
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1698 AGAAAAACCGAAGCAAACATATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAA 1757
Query 1379 AGGAACTGGCTCAAATGTTCCGAAAATTTGGAAGTCTTGACAAAATTATTCTCCCTCCGA 1438
||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct 1758 AGGAACTGGCTCAAATGTTTGGAAAATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGA 1817
Query 1439 CGAAGACGATGGCTTTGGTTGT-TTTCCTTGAACCGGCTGAGGCACGTGCAGCT-TTGAA 1496
||||||||||||| |||| ||| |||| | || |||||||||||||| |||||| || ||
Sbjct 1818 CGAAGACGATGGCCTTGGCTGTGTTTC-TGGAGCCGGCTGAGGCACGCGCAGCTCTT-AA 1875
Query 1497 CGGAATGGCATACAAGCGTTACAAAGATGTTCCCCTGTATCTGGAGTGGGCTCCTCGAGA 1556
|||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |
Sbjct 1876 GGGAATGGCATACAAGCGTTACAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAA 1935
Query 1557 TATTCTTGAACCAAAAGCA-CTTGCC-GATAACAAAGAAGAGAAGA-GTG-CTGTTGAAG 1612
||||||||| |||||| | ||| || || | ||| ||||||| || ||| | ||||||
Sbjct 1936 TATTCTTGAGCCAAAAA-ATCTT-CCTGACACCAATGAAGAGA-GAAGTGACA-TTGAAG 1991
Query 1613 AAAATGATGCGAGAAGAGTCAACCTGGATCAGCAGGTTGGAATCTATTCGGATATAGCCG 1672
|||||| | ||||||||||||| |||| |||||||||| |||| || | ||| || | |
Sbjct 1992 AAAATGGCGTGAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTG 2051
Query 1673 AGTCAAATGTCCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGA 1732
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 AGTCAAATGTCCTTAATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGA 2111
Query 1733 AGCATTTGACTGGACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGATAATAAGAG-AT 1791
||||||| ||| |||||||||||||||||||||||| ||||| | |||||||| || ||
Sbjct 2112 AGCATTTCACTAAACTGGTGAAGCAGGGAAAGATTCTCAGTGTCACGATAATAA-AGCAT 2170
Query 1792 TG---GAA-GAGACGT--CGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAG 1845
||| |||| || | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2171 AAAAAGAATGAGAAGTATCTTTCAAGCGGTTATGGTTTTGTAGAATTCGACTCTGTAGAG 2230
Query 1846 ACAGCGACCAGTGTCTACAGAGATCTACCAGTAGAGGGAAATGTTCTGGATGGGCATTCT 1905
||||| |||||||||||||||||||||| || | || | |||||||||||||||| ||
Sbjct 2231 ACAGCCACCAGTGTCTACAGAGATCTAC-AG--G-GG-AC-TGTTCTGGATGGGCATGCT 2284
Query 1906 TTGATCTTGAGTTATTCTG--AAAACAAGCGGAGTGA-AACGGTTGGGGAAGGTTCAGAC 1962
||||||||||| |||||| |||||||||||||||| || |||||| ||| |||| ||
Sbjct 2285 TTGATCTTGAG--ATTCTGTGAAAACAAGCGGAGTGACAA-GGTTGGAAAAGATTCAAAC 2341
Query 1963 AAG 1965
|||
Sbjct 2342 AAG 2344
> AT5G05720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1716871-1719541 FORWARD LENGTH=1356
Length=1356
Score = 353 bits (191), Expect = 3e-96
Identities = 287/331 (87%), Gaps = 16/331 (5%)
Strand=Plus/Plus
Query 15 GTCTAGGATAATCGTTAAGAATGTT-C--CCAAATATGTGACAGAGGATCAACTACGAGG 71
|||| ||||||||||||||||| || | ||||| ||||||||||||| | ||| ||||
Sbjct 3 GTCTTGGATAATCGTTAAGAATCTTCCTTCCAAACATGTGACAGAGGAACGACTTCGAGA 62
Query 72 TATCTTTTCACGAAAAGGAGAAATCACAGACGTGAAATTGAAGCGTTTAAGTGATGGCAC 131
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 63 TGTCTTTTCACGAAAAGGAGAAATCGCAGACGTGAAATTGAAGCGTAAAAGTGATGGCAA 122
Query 132 AAGTAGACAATTTGCTTATATTGGATTTCGTAATGATCAAGAAGCTCAAGATGCTATCAC 191
|||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 123 AAGTAGACAATTTGCTTATATTGGCTTTCGTACTGAACAAGAAGCTCAAGATGCTATCAC 182
Query 192 TTACT-TTAACAAGTCTTTCATTGATACTCT-TCGAATATCTGTTTTGCTTGCGGACCCT 249
|| | ||||||||| ||||||||||||| | ||||||||||||| | |||||||||||
Sbjct 183 ATA-TGTTAACAAGTGTTTCATTGATACT-TATCGAATATCTGTTGAGGTTGCGGACCCT 240
Query 250 CCTCCGA-GGACACAAGGGAAGG---CTGA-TGAA-AAGAGTGAACATGCTTATGCTAAA 303
||||||| ||| | ||||||||| | | |||| | | | ||||||||||||||
Sbjct 241 CCTCCGAGGGA-AGAAGGGAAGGAAAAT-ACTGAACATTTTTCTA-ATGCTTATGCTAAA 297
Query 304 GGAGACAAAAAGATTAAGAAGAAACCAGAGG 334
|||||||||||||||||||||||||||||||
Sbjct 298 GGAGACAAAAAGATTAAGAAGAAACCAGAGG 328
Score = 291 bits (157), Expect = 3e-77
Identities = 291/350 (83%), Gaps = 31/350 (9%)
Strand=Plus/Plus
Query 1456 GTTGTTTTCCTTGAACCGGCTGAGGCACGTGCAGCTTTGAACGGAAT-GGCATACAAGCG 1514
|||||||||||||||||| ||||||||||| |||| |||| ||||| ||| ||||||||
Sbjct 610 GTTGTTTTCCTTGAACCGATTGAGGCACGTGAAGCTCTGAAGGGAATGGGCGTACAAGCG 669
Query 1515 TTACAAAGATGTTCCCCTGTATCTGGAGTGGGCTCCTCGAGATATTCTTGAACCAAAAGC 1574
||||||||||| |||||||||||| | |||||||| ||||||||||||| ||||||||
Sbjct 670 TTACAAAGATGCTCCCCTGTATCT---G-GGGCTCCTAGAGATATTCTTGAGCCAAAAGC 725
Query 1575 ACTTGCCGATAACAAAGAAGAGAAGAGTGCTGTTGAAGAAAATGATGCGAGAAG-AG--T 1631
||||||||||||||| ||| | | ||||| ||||||||||||||||| |||||| || |
Sbjct 726 ACTTGCCGATAACAATGAAAATACGAGTGATGTTGAAGAAAATGATGTGAGAAGAAGACT 785
Query 1632 CAACCTGGATCAGCAGGTTGGAATCTATTCGGATATAGCCGA-G--T---CA---AATG- 1681
|||| |||||||||||||||||||| ||||||||||| | || | | || |||
Sbjct 786 CAACTTGGATCAGCAGGTTGGAATCGATTCGGATATAACTGAGGTATGCCCACTTTATGA 845
Query 1682 -TCCT-T---C---ATGTAA--A-G-AATCTGAGCTTCAAGACAACTGATGAGGGTTTGA 1729
| || | | || || | | | ||||| ||||||||| ||||||||| ||||||
Sbjct 846 TTGCTGTGGACGTTTTGAAACCATGTATTCTGAACTTCAAGAC-ACTGATGAGAGTTTGA 904
Query 1730 AGAAGCATTTGACTGGACTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAG 1779
||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 905 AGAAGCATTTGACTGAACTGGTGAAGCAGGGAAAGATTCTGAGTTTTAAG 954
Score = 226 bits (122), Expect = 8e-58
Identities = 145/156 (93%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 508 GTTGGTGACGATGTTTCTGATATGGAATACTTGAAGAGTCGGATAAAGAAAAATCTGTCG 567
|||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 418 GTTGGTGATGATGTTTCTGATATGGAATACTACAAGAGTCGGACAAAGAAAAATCTGTCG 477
Query 568 GATTCGGACAGTGATTGTGAAACTGATAGTCGTGAAGATGCAATTCATGTTTTTCCTATT 627
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 478 GATTCGGACAGTGATTGTGAAACTTATGGTTGTGAAGATGCAATTCATGTTTTTCCTATT 537
Query 628 GATGGAGA-AGTTGAAGCTGACAGAGTCGACAAAga 662
||||| || | |||||||||||||||| ||||||||
Sbjct 538 GATGGGGATA-TTGAAGCTGACAGAGTTGACAAAGA 572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111043605540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5