BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893017
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11030.2 | Symbols: ALF4 | aberrant lateral root formation 4... 2724 0.0
> AT5G11030.2 | Symbols: ALF4 | aberrant lateral root formation
4 | chr5:3490833-3495132 REVERSE LENGTH=2023
Length=2023
Score = 2724 bits (1475), Expect = 0.0
Identities = 1676/1773 (95%), Gaps = 14/1773 (1%)
Strand=Plus/Plus
Query 11 CTTCTCCTTCACGTCGTGTACGAGAACTTCTAGCTTTGTGTTTCAGtttttttCAGTCAG 70
|||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 101 CTTCTCCTTCGCGTCGTGTACGAGAACTTTTAGCTTTGTGTTTCAG-----TTCAGT-TG 154
Query 71 TTGAAGCTGGAGGATTTCGAGAGTTGGAGAGCTTAGTGACAGAACTTGTCAACTGTTTGA 130
||||| |||||||||| ||| || ||||| || |||||||||||||||| |||||||
Sbjct 155 AAGAAGCCGGAGGATTTCAAGACTTTGAGAGTTTTGTGACAGAACTTGTCAGCTGTTTGG 214
Query 131 ATTCTTTGTATGAGAACGTAGTTTTGAATGCCAGCGATGAACTGGAGAATGATGTTATT- 189
||||||||||||||||||||| |||| |||| | | ||||||||||||| |||||||||
Sbjct 215 ATTCTTTGTATGAGAACGTAGCTTTGGATGCTAACAATGAACTGGAGAACGATGTTATTG 274
Query 190 --GAAGTATTAGATGAAATTTTGAAAGTTTTGTCATCTCCTCAAGTGGATCAGGATGTTA 247
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 275 AAGAAGTATTAGATGAAATTTTGAAAGTTTTATCATCTCCTCAAATGGATCAGGATGTTA 334
Query 248 TTGATGCACTGTCATTTCACTTGCCAAAAGTAACTTCCAAGTTTGCAGACCTATCAAGCA 307
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 335 TAGATGCACTGTCATTTCACTTGCCAAAAGTAACTTCCAAGTTTGCAGACATATCAAGCA 394
Query 308 GATGTTTACAGTTAGTTGAGGAAATCGTTGATCGATTTGTGGAAGCATGCAATCCACGGG 367
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 395 GATGTTTACAGTTAGTTGAGGAAATCGTTGATCGGTTTGTGGAAGCATGCAATCCACGGG 454
Query 368 ACATGCTTTCAATTCTTTGTGAGGCACTCGATGCTGCACGGTGCTCTCTTTCACCCTCCA 427
| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct 455 ATATGCTTTCAATTCTTTGTGAGGCACTCGATGCTGCACGGTGCTATCATTCAGCCTCCA 514
Query 428 GTTGTTCTACTCCTTTATTACATGGGCTCTCTAAAGTATTTATTTCGATTCAGAGGCGTC 487
|||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 515 CTTGTTCTACTCCTTTATTGCATGGGCTCTCTAAAGTATTTATTTTGATCCAGAGGCGTC 574
Query 488 ACTACGAGCAATTGAAA-GTTGCAGTTCCAATTGTCCTGAACGTTTTGAAGGACATTTCA 546
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ACTACGAGCAATT-AAAGGTTGCAGTTCCAATTGTCCTGAACGTTTTGAAGGACATTTCA 633
Query 547 TTGGAAACAGACGTGCAAGTTGAAGATTTATTTGATAAGGCTCTAGGCATTGCCTCTTCA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TTGGAAACAGACGTGCAAGTTGAAGATTTATTTGATAAGGCTCTAGGCATTGCCTCTTCA 693
Query 607 ATTCGAGAAGTTTCTTCAAAACTGAATAACGAAGAAGAAGCAAAAGTCCGTTGTCTGCTT 666
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 ATTCGAGACGTTTCTTCAAAACTGAATAACGAAGAAGAAGCAAAAGTCCGTTGTCTACTT 753
Query 667 GGTCTCTATGTGATACAGATAACGGCTATTCTTTCAGTTAGCATCAGAGACAAAGCGGCC 726
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 754 TGTCTCTATGTGATACAGATAACGGCTATTATTTCAGTTAGCATCAGAGACAAAGCGGCC 813
Query 727 TCTTGTATTCCTCTGGTGATTCAGTTAGAACCTTTCTTGACATACTGTGGTTTAACACAT 786
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 814 TCTTGTATTCCTCTGGTGATTCAGTTAGAACCGTTCTTGACATCCTGTGGTTTAACACAT 873
Query 787 CTTGGTTTAATCACGGGAAACGACACTGAAAAATTAATGAGCACAGTTGCTATAGATGAT 846
||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||
Sbjct 874 CTTGGTTTAATCACGGGGAATGACACTGAAAAATTAATGAGCACGGTTGCTGGAGATGAT 933
Query 847 GATGATGATTTCGGCACCTCTTTCCCTGACATCAACTTGGGTGCGTCGCTTTTACTCATC 906
||||| | ||| |||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 934 GATGA-G-TTTAT-CACCTCTTTCCCTGACATCAGCTTGGGTGCATCGCTTTTATTCATC 990
Query 907 TGGGCAAAGATCTCACATGAGGTTGCAGAGGCTGCTAATGCGGCTTTAGGAAGTGATGTA 966
|| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 991 TGTGCAAAGATCTCCCATGAGGTTGCAGAGGCGGCTAATGCGGTTTTAGGAAGTGTTGTT 1050
Query 967 GATGAGCTTCAAAGCAATCCAGTGAAAAGGTGGCAAGCTTATGGGATGTTGAAATATATA 1026
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GATGAGCTTCAAAACAATCCAGTGAAAAGGTGGCAAGCTTATGGGATGTTGAAATATATA 1110
Query 1027 CTTTCCTCTGTAGATCTGCTCTGGGAATTCAAAAGACATGCTATCGAGTTCTTGCTTGAC 1086
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTTTCCTCTGGAGATCTGCTCTGGGAATTCAAAAGACATGCTATCGAGTTCTTGCTTGAC 1170
Query 1087 ATAACAGAAGGAGTTACTTCATCTCAATGCAATGATGAGCAAATAGATTGTTCGCACTAC 1146
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1171 ATAACAAAAGGAGTTACTTCATCTCAATGCAATGATGAGCAAATAGATTGTTCGGACTAC 1230
Query 1147 ACGCCTGGCATCTACGCTGCTTTACAGGCTGTTACATTAGTGATCATGTATGCCCCAGAC 1206
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1231 ACGCCTGGCATCTACGCTACTTTACAGGCTGTTACATTACTGATCATGTATGCGCCAGAC 1290
Query 1207 GCAGATCTGAGGAAAAAGACATTTGAGGCACTGAAGAGGGTTCTTTCTGATATCGCAGCT 1266
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1291 GCAGATCTGAGGAAAAAGACATTTGAGGCACTGAAGAGGGTTCTTTCTGATATCCCAGCT 1350
Query 1267 CCTCATAGGTTTGATGTTTTAAGAGCCCTTGTCACAAATTCCCGGTCTCCTTCAATGACA 1326
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CCTCATAGGTTTGACGTTTTAAGAGCCCTTGTCACAAATTCCCGGTCTCCTTCAATGACA 1410
Query 1327 GCAATCCTTCTGGGTCTAGTTAAAGACAGCATGAGCGAAAGCAGTTTGCAAGCTACAGAT 1386
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1411 GCAATCCTTCTGGGTCTAGTTAAAGACAGCATGAGCAAAAGCAGTTTGCAAGATACAGAT 1470
Query 1387 TGTGCGACTACTGATACGCATGTTATTGAGCTAGTGGAGTTGGTCTTAAGGCCTCCAGAG 1446
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1471 TGTGCGGCTGTTGATACGCATGTTATTGAGCTAGTGGAGTTGGTCTTAAGGCCTCCACAG 1530
Query 1447 GGAGGTCCTCCACTCCTTCCGGACCAGAGTGATGCGGTCCTGGCGGCACTTAACCTCTAC 1506
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1531 GGAGGTCCTCCACTCCTTCCGGACCAGAGTGATGCGATCCTGGCGGCACTTAACCTCTAC 1590
Query 1507 AGGTTTGCACTGTTATTTGAATCGAGAGAATGTGAAGCAGGTAAAGAGAGAAGCAAAGTA 1566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 AGGTTTGCACTGTTATTTGAATCGAGAGAATGTGAAGCAGGTAAAGAGAGAAGCAAAGTC 1650
Query 1567 GGCAGTGAAATTTTGTCAAAGAAGAATCTGGAGAAAGCGTATAAGGAATGGCTTCTTCCT 1626
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1651 GGCAGTGATATTTTGTCAAAGAAGAATCTGGAGAAAGCGTATAAGGAATGGCTTCTGCCT 1710
Query 1627 CTTCGAACTCTTATGAGCTGCAGCATCGCTGAGAACCCCAAGGAGGATCATGGCCAAGAA 1686
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1711 CTTCGAACTCTTGTGAGCTGCAGCATCGCTGAGAACCTCAAGGAGGATCATGGCCAAGAA 1770
Query 1687 CCTTCACTCGGCGATGTATGCCTTCTGAACACAATTGAATTTGTTCTATATCGATGTATC 1746
||||||||| ||||||| | ||||||||| |||||||||| |||||||||||||| |||
Sbjct 1771 TCTTCACTCGACGATGTAGGGCTTCTGAACCCAATTGAATTGGTTCTATATCGATGCATC 1830
Query 1747 GAGCTCGTGGAAGAAAGGTTGAAAAGTCATTAG 1779
|||||||||||||||| ||||||||||||||||
Sbjct 1831 GAGCTCGTGGAAGAAAAGTTGAAAAGTCATTAG 1863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88001555385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5