BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893023
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23780.1 | Symbols: | F-box family protein | chr1:8406686-8... 259 3e-68
AT1G11950.1 | Symbols: | Transcription factor jumonji (jmjC) d... 209 3e-53
AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily prot... 124 1e-27
AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosin... 108 1e-22
> AT1G23780.1 | Symbols: | F-box family protein | chr1:8406686-8408525
REVERSE LENGTH=1840
Length=1840
Score = 259 bits (140), Expect = 3e-68
Identities = 205/235 (87%), Gaps = 9/235 (4%)
Strand=Plus/Plus
Query 81 CGACGGCTCAATCCCACGGCGCCTT-CTCCGTTCATATCTATCGCTTAATCGTAAAGACG 139
|||||| |||| ||||||| ||||| |||||||| |||| ||||| |||||||||||||
Sbjct 130 CGACGGATCAACCCCACGGTGCCTTCCTCCGTTC--ATCTCTCGCTCAATCGTAAAGACG 187
Query 140 AGCTCATCACGCCTTCGCCGGAGGATACGCTCCGATCTCTTGGTTTAATATCCGGTGACC 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AGCTCATCACGCCTTCGCCGGAGGATACGCTCCGATCTCTTGGTTTAATATCCGGTGACC 247
Query 200 TAATTTACCAATCTCTTGAGGCTGACGAATTTTCG--TCGAAAATTGAGAGATTATCAAA 257
|||||||| ||||| ||||||| ||||| |||| | | ||||||||||||| | |||
Sbjct 248 TAATTTACTTCTCTCTCGAGGCTGGCGAATCTTCGAATTGGAAATTGAGAGATTCTGAAA 307
Query 258 CCA-AGCTCCTCAATCGGAGAGTTATCATG-CGATTGTTCATGAATCTAT-GGGT 309
|| |||| |||||||||||||| |||| | ||| ||||||||| || || ||||
Sbjct 308 CCGTAGCTTCTCAATCGGAGAGTAATCA-GACGAGTGTTCATGATTCGATTGGGT 361
> AT1G11950.1 | Symbols: | Transcription factor jumonji (jmjC)
domain-containing protein | chr1:4034587-4038758 REVERSE LENGTH=2955
Length=2955
Score = 209 bits (113), Expect = 3e-53
Identities = 134/144 (93%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 574 GAGAAGAAGCAGAGGAGCTCTG-TAAAAAGGAGAGCAACTACATGGAAAGAAGAAGAAGT 632
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 435 GAGAAGAAGCAGAGGAGCTCTGTTAAAAA-GAGAGCAACTACATGGAAAGAAGAAGAAGT 493
Query 633 TGTTGATGTTGATAAAAAGAAATGCGAACAAGAACTCCAAGTAGTTCCTTTCATCAAGGC 692
||||| || |||| ||||||||||||||||| |||||||| ||||||||| || ||||||
Sbjct 494 TGTTGTTGATGATGAAAAGAAATGCGAACAACAACTCCAACTAGTTCCTTCCAGCAAGGC 553
Query 693 AACATCTCGTAGCAGGAGCAAGAA 716
||||||||| ||||||||||||||
Sbjct 554 AACATCTCGAAGCAGGAGCAAGAA 577
> AT2G39190.2 | Symbols: ATATH8 | Protein kinase superfamily protein
| chr2:16349968-16355963 FORWARD LENGTH=2835
Length=2835
Score = 124 bits (67), Expect = 1e-27
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 487 ATCATTGAAGAGGAATTAGGTGGTCCTGTCGAATCTTTCTTTAGCCAGTTTTCTCAAGAA 546
||| |||||| |||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 929 ATCCTTGAAGGGGAATTAGGTGGTCCTGTCGAATCATTCTTTAGTCAGTTTTCGCAAGAA 988
Query 547 ACTGTAGCAGCAGCATCCTTTG 568
||||||||||||||||||||||
Sbjct 989 ACTGTAGCAGCAGCATCCTTTG 1010
> AT1G09150.1 | Symbols: | pseudouridine synthase and archaeosine
transglycosylase (PUA) domain-containing protein | chr1:2946229-2949159
FORWARD LENGTH=1014
Length=1014
Score = 108 bits (58), Expect = 1e-22
Identities = 66/70 (94%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 723 CAACCTTAGCTTTGATTTGATTTGTTTTCAAACATTTGATACTTATTTTAAGAGGGAACA 782
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 851 CAACCTTAGCTTTGGTTTGATTTGTTTTCAAACATTTGATACTTATTTTATGAGGGAACG 910
Query 783 TCAACCCTAG 792
|||||| |||
Sbjct 911 TCAACCTTAG 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5