BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893044
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11290.1 | Symbols: | Plant protein of unknown function (DU... 1389 0.0
> AT5G11290.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr5:3599001-3600472 FORWARD LENGTH=1472
Length=1472
Score = 1389 bits (752), Expect = 0.0
Identities = 780/794 (98%), Gaps = 0/794 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGATCATAAACTGAGGTACCTACAGAGTTTTATTCCTAGAACAGCCTTAAGTTTG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 ATGGAAGATCATAAACTTAGGTACCTACAGAGTTTTATTCCTAGAACAGCCTTAAGTTTG 225
Query 61 GAAGACCTGGTAGGAGTTGCAAGGACATGGGAAGAAAGGGCTCGCTTTTGTTACACAGAA 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 GAAGACCTGGTAAGAGTTGCAAGGACATGGGAAGAAAGGGCTCGCTTTTGTTACACAGAA 285
Query 121 GATGTAAGACTTAGTAGCGATGAATTTGTGAAGATGTTAATCGTTGATGCAAGCTTCCTA 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 286 GATGTAAGACTTAGTAGCGATGAATATGTGAAGATGTTAATCGTTGATGCAAGCTTCCTA 345
Query 181 GTAGAACTTCTTTTGAGGTCTCAGTTTGATGTATACAGAGGTATGCTAGATAGGATATAT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 346 GTAGAACTTCTTTTGAGGTCTCAGTTTGATGTATATAGAGGTATGCTAGATAGGATATAT 405
Query 241 GGGAAGCAAAAGATGATTGTCGATGTGAACCATGACGTTATGTTACTTGAAAATCAGCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGGAAGCAAAAGATGATTGTCGATGTGAACCATGACGTTATGTTACTTGAAAATCAGCTT 465
Query 301 CCATATTTTGTTGTCGAGGGGATGTTTGGATTGCTACATGTTGACTACCATAGGGAACTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCATATTTTGTTGTCGAGGGGATGTTTGGATTGCTACATGTTGACTACCATAGGGAACTT 525
Query 361 CCACCTCTGACTCGAATCATTCACAACCACTTCAAGAAATTCTGGATGAGCATCCCTTCA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CCCCCTCTGACTCGAATCATTCACAACCACTTCAAGAAATTCTGGATGAGCATCCCTTCA 585
Query 421 TTTTCGAGAAGCATTTCTGATTCAAAGATCTGTCATTTTGTTGACCTTCTGCGATCTATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TTTTCGAGAAGCATTTCTGATTCAAAGATCTGTCATTTTGTTGACCTTCTGCGATCTATT 645
Query 481 CACCTGCCTTTGGTTTTGAGTTTTCCAGGAGGAAGCATGAGGATGATGGACTCTGTACAG 540
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 646 CACCTGCCTTTGGTTTTGAGTTTTCCTGGAGGAAGCATGAGGATGATGGACTCTGTACTG 705
Query 541 AGTGCAAAAGAGATTCAAAATGCAGGTGTTAAGCTCCAGCCCGCAGACAACAACACCTGT 600
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 706 AGTGCAAAAGAGATTCAAAATGCCGGTGTTAAGCTCCAGCCCGCAGATAACAACACCTGC 765
Query 601 GCACTTGACATAAGCTTTGCAAACGGAGTCCTCACGATTCCCAAAATCAAGATCAACGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCACTTGACATAAGCTTTGCAAACGGAGTCCTCACGATTCCCAAAATCAAGATCAACGAC 825
Query 661 ATCACAGAATCTCTGTACAGAAACATCATCTTGTTTGAGCAATGTCATCGTTTAGATGTT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 826 ATCACAGAATCTCTGTACAGAAACATCATCTTGTTTGAGCAATGTCATCGTTTAGATGCT 885
Query 721 TACTTCATCCACTATATGAGGTTCCTCAGTTGCTTCATAAGATCTCCCATGGATGCTGAA 780
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TACTTCATTCATTATATGAGGTTCCTCAGTTGCTTCATAAGATCTCCCATGGATGCTGAG 945
Query 781 TTGTTCATTGACCA 794
||||||||||||||
Sbjct 946 TTGTTCATTGACCA 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5