BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893068
Length=3309
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11530.1 | Symbols: EMF1 | embryonic flower 1 (EMF1) | chr5:... 4959 0.0
> AT5G11530.1 | Symbols: EMF1 | embryonic flower 1 (EMF1) | chr5:3695862-3701548
FORWARD LENGTH=4059
Length=4059
Score = 4959 bits (2685), Expect = 0.0
Identities = 3115/3320 (94%), Gaps = 40/3320 (1%)
Strand=Plus/Plus
Query 1 ATGGGATCATCCATCAAGATCAACTCAATATCCATAGATCTCGCAGGCGCTGCCAACGAG 60
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 386 ATGGGATCTTCCATCAAGATCAACTCAATATCCATAGATCTCGCAGGTGCTGCCAACGAG 445
Query 61 ATTGATATGGTGAAATGTGATCATTTCTCCATACGTGGATTCGTAGCTGAAACCCGTGAG 120
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 446 ATTGATATGGTGAAATGTGATCATTTTTCCATGCGTGGATTCGTAGCTGAAACTCGTGAG 505
Query 121 AGAGACCTTAGAAAATGTTGGCC-TTTTGCAGAAGAGAGTGTTAGTTTAGTGGACCAACA 179
||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||
Sbjct 506 AGAGACCTTAGAAAATGTTGGCCGTTTT-CAGAAGAGAGTGTTAGTTTAGTAGACCAACA 564
Query 180 AAACTATTCTCTTCCTTCTTTATCTGTTCCAAAGTTTAGATGGTGGCATTGTATGAGCTG 239
|| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 AAGCTATACTCTTCCTACTTTATCTGTTCCAAAGTTTAGATGGTGGCATTGTATGAGCTG 624
Query 240 CATCAAAGATATAGATGCTCATGGGACAAAAGATTGTGGACTGCATTCAAACTCGAGAA- 298
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 625 CATCAAAGATATAGATGCTCATGGGCCAAAAGATTGTGGACTGCATTCAAACTC-AAAAG 683
Query 299 CTATTGGAAACTCTTCGGTTATTC-CAAGTAGAAGCAAATTGAATTCGCTTACTATCATT 357
|||||||||||||||| |||| || ||||| |||||| || |||||||| |||||||||
Sbjct 684 CTATTGGAAACTCTTCTGTTA-TCGAAAGTAAAAGCAAGTTCAATTCGCTAACTATCATT 742
Query 358 GATCACGAGAAAGAAAAGAAAATTGATATTGCAGGTAATGCTGTTGAGGAGAATGTGGGT 417
|||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||
Sbjct 743 GATCACGAGAAAGAAAAGAAAACTGATATTGCAGATAATGCTATTGAGGAGAAAGTGGGT 802
Query 418 GTTAACTGTGAGAGACCTCAGAAGGATGATCAGACAGCTACTACGTTTCTCAAGAAAGTT 477
|| |||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 803 GTAAACTGTGAGA-A--T------GATGATCAGACAGCTACTACGTTTCTCAAGAAAGCA 853
Query 478 CGTGCTCGACCTATGGATGCTTCTACTGGTAGGAGCAAGAGCAGAAAGCTCGCGAGTCCA 537
|||| ||||||||||| |||||||| || ||||||||||||||||||||| | ||||||
Sbjct 854 CGTGGTCGACCTATGGGTGCTTCTAATGTTAGGAGCAAGAGCAGAAAGCTTGTGAGTCCG 913
Query 538 GAGCAGGTAGGCAACAAGAGATCTAAAGAAAAAGTAAACAAATCATCGATGGATATTAGC 597
||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 914 GAGCAGGTAGGAAACAACAGATCTAAAGAAAAACTAAACAAACCATCGATGGATATTAGC 973
Query 598 AGCTGGAAAGATCAGAAACATAATGTGGATCAGGCTATGACAACTTTCGGGTCATCTGAA 657
|||||||||| ||||||| ||||||||||||||| ||||||| ||||| |||||||||
Sbjct 974 AGCTGGAAAG---AGAAACAAAATGTGGATCAGGCTGTGACAACGTTCGGCTCATCTGAA 1030
Query 658 ATTGCTGGTGTGGTTGAGGATACACCACCCAAGGCAACCAAGAATCATAAAGGCATTCGT 717
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1031 ATTGCTGGTGTGGTTGAGGATACACCACCTAAGGCAACCAAGAATCATAAAGGCATTCGC 1090
Query 718 GGTCTGATGGAATGTGACAATGGGTCATCAGAGAGTATAAATCTTGCTATGAGTGGGTTG 777
|||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1091 GGTCTGATGGAATGCGATAACGGGTCATCAGAAAGTATAAATCTTGCTATGAGTGGGTTG 1150
Query 778 CAGCGTAGGAAATCTCGCAAGGTTCGTCTACTCAGTGAGTTGCTTGGTAATACGAAAACC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1151 CAGCGTAGGAAATCTCGCAAGGTTCGTCTACTCAGTGAGTTGCTTGGTAATACAAAAACC 1210
Query 838 AGTGGTGGTAGTAGTATCAGAAAAGAAGAGTCTGCTTTGAAAAAGGAATCGGTTAGAGGG 897
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1211 AGTGGTGGTAGTAACATCAGAAAAGAAGAGTCTGCTTTGAAGAAGGAATCAGTTAGAGGT 1270
Query 898 AGGAAAAGAAAGTTGTTACCTGAAAACAATTATGTCAGCCGGATATTGAGTACAATGGGG 957
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 CGAAAAAGAAAGTTGTTACCTGAAAACAATTATGTCAGCCGGATATTGAGTACAATGGGT 1330
Query 958 GCAACCTCTGAAAATGCCTCCAAAAGTTGTGACTCTGATCAAGGTAATAGTGAATCAACT 1017
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GCAACCTCTGAAAATGCTTCCAAAAGTTGTGACTCTGATCAAGGTAATAGTGAATCAACT 1390
Query 1018 GATAGTGGATTTGACAGAACTCCATTTAAGGGTAAGCAGAGAAACAGAAGATTTCAGGTT 1077
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 GATAGTGGGTTTGACAGAACTCCATTTAAGGGTAAGCAGAGAAACAGAAGATTTCAGGTT 1450
Query 1078 GTTGACGAGTTTGTACCATCACTTCCTTGTGAAGCTTCACAAGAGGGCGTCATGGAGCAT 1137
||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||
Sbjct 1451 GTTGACGAGTTTGTACCATCACTTCCTTGTGAAACTTCACAAGAAGGTATCAAGGAGCAT 1510
Query 1138 GATGCAGATCCCAGTAAGAGATCAACTCCTGTGCACTCTTTATTCACTGGAAAAGATT-T 1196
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 1511 GATGCAGATCCTAGTAAGAGATCAACTCCTGCGCACTCTTTATTCACTGGAAACGATTCT 1570
Query 1197 GGTTCCTTGTCCTCCGAGTACTCAGAGAACAGAGAGGAAGCCCAGTTTAGCCAAGAAGAA 1256
||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1571 -GTTCCTTGTCCTCCGGGTACTCAGAGAACAGAGAGGAAGCTCAGTTTACCCAAGAAGAA 1629
Query 1257 GACAAAGAAGCCTGTAATAGATAATGGGAAGAGCACCGTGATCAGTTTTAGTACCGGCAT 1316
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1630 GACAAAGAAGCCTGTAATCGATAATGGGAAGAGCACTGTGATCAGTTTTAGTAACGGCAT 1689
Query 1317 TGATGGAAATCAAGTTAAATCGCAAACTGGTCCTTCCAT-AAGCACTGTTTCCCAAACTC 1375
|||||||| ||||||||| ||||| |||||||||||||| || ||| || ||||||||||
Sbjct 1690 TGATGGAAGTCAAGTTAACTCGCATACTGGTCCTTCCATGAA-CACAGTATCCCAAACTC 1748
Query 1376 AAGATTTGTTGAATGAGAAAAGGGTGGGCAGTATATTTGACAACCGTTTGGCTTCAGATG 1435
||| || ||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1749 GAGACTTATTGAATGGGAAAAGGGTGGGCGGTTTATTTGACAACCGTTTGGCTTCAGATG 1808
Query 1436 GATATTTCAGGAAATATATCACTCAGCCTAATGATAAGCCCATAACTTCTTTGCATTTGC 1495
|||||||||| |||||| || ||||| |||||||||||| ||||| |||||||||||||
Sbjct 1809 GATATTTCAGAAAATATCTCTCTCAGGTTAATGATAAGCCGATAACATCTTTGCATTTGC 1868
Query 1496 AAGACAATGATTATGTGAGGTCAAGAGACGCGGAACCAAACTGTCTTCGAGATTTTAGTT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1869 AAGACAATGATTATGTGAGGTCAAGAGACGCGGAACCAAACTGTCTTCGAGATTTTAGTT 1928
Query 1556 CCTCTTCTAAATCCAGCTCAGGTGGATGGTTGAGAACTGGAGTAGATATTGTTGACTTCA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1929 CCTCTTCTAAATCCAGCTCAGGTGGATGGTTGAGAACTGGAGTAGATATTGTTGACTTCA 1988
Query 1616 GAAACAACAACCACAATACAAATAGATTGTCTTTCTCGAACTTGAACCTAAGATACCCCC 1675
|||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||
Sbjct 1989 GAAACAACAACCACAATACAAACAGATCGTCTTTCTCGAACTTGAAGCTAAGATACCCCC 2048
Query 1676 CTTCTTCTACTGAATTTGCGGAAGTATCTCGGGTGCTGCAAAAGGATGCTTCTGGTGTAG 1735
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 2049 CTTCTTCTACTGAAGTTGCGGATTTATCTCGGGTGCTGCAAAAGGATGCTTCTGGTGCAG 2108
Query 1736 ACAGAAAGGGGAAGACTGTTATGGTCCAAGAACATCATGGAGCACCAAGAAGCCAAAGCC 1795
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2109 ATAGAAAGGGGAAGACTGTTATGGTCCAAGAACATCATGGAGCACCAAGAAGCCAAAGTC 2168
Query 1796 ACGATAGAAAGGAGACTACGACTGAAGAGCAAAACAACGATGATATTCCCATGGAGATAG 1855
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2169 ACGATAGAAAGGAGACTACGACTGAAGAGCAAAACAACGATGATATTCCAATGGAGATAG 2228
Query 1856 TGGAGCTCATGGCCAAAAACCAGTACGAGAGGTGTCTTCCCGACAAAGAAGAAGACGTTA 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2229 TGGAGCTCATGGCCAAAAACCAGTACGAGAGGTGTCTTCCCGACAAAGAAGAAGATGTTA 2288
Query 1916 GCAACAAACAGCCATCACAAGAAACGGCACACAAATCCAAGAATGCACTACTGATTGATC 1975
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2289 GCAACAAACAGCCATCACAAGAAACAGCACACAAATCCAAGAATGCTCTACTGATTGATC 2348
Query 1976 TCAATGAAACCTACGATAACGGGATCTCACTTGAGGACAACAACACATCAAGACCACCAA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2349 TCAATGAAACCTACGATAACGGGATCTCACTTGAGGACAACAACACATCAAGACCACCAA 2408
Query 2036 AACCGTGTGGTAGCAACGCAAGGAGGGAAGAATATTTTCCTATGGGAAAACAGCAGAACT 2095
|||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2409 AACCGTGTAGTAGCAACGCAAGGAGGGAAGAACATTTTCCTATGGGAAGACAGCAGAACT 2468
Query 2096 CTCATGATTTTTTCCCAATAAGTCAGCCTTATGTGCCTTCTCCTTTTGGGATCTTTCCTC 2155
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2469 CTCATGACTTCTTCCCAATAAGTCAGCCTTATGTGCCTTCTCCGTTTGGGATCTTTCCTC 2528
Query 2156 CCACGCAAGAAAACCGAGCCAGCGCCATCCGGTTTTCTGGTCACAACTGTCAGTGGCTTG 2215
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2529 CTACCCAAGAAAACCGAGCCAGCTCCATCCGGTTTTCTGGTCACAACTGTCAGTGGCTTG 2588
Query 2216 GGAATTTGCCAACTGTGGCTAATCAGAACCCTTCTCCATCCTCATTTCGGGTATTACGTG 2275
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2589 GGAATTTGCCAACTGTGGGTAATCAGAACCCTTCTCCATCCTCATTTCGGGTATTACGTG 2648
Query 2276 CTTGCGATACGTGCCAGAGTGTTCCTAATCAATACAGAGAAGCTTCTCATCCAATTTGGC 2335
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2649 CTTGTGATACTTGCCAGAGTGTTCCTAATCAATACAGAGAAGCTTCTCATCCAATTTGGC 2708
Query 2336 CATCCTCCATGATACCACCACAGAGTCA-TCCCAAGCCAGTTTCTTTCAATATGGATCAG 2394
|||| ||||||||||||||||||||||| | | |||||||||||||| ||||| |||||
Sbjct 2709 CATCTTCCATGATACCACCACAGAGTCAATAC-AAGCCAGTTTCTTTAAATATTAATCAG 2767
Query 2395 TCAACAAAGCCGGGTACGCTTTCACAGGCATCTAATAATGAAAATACGTGGAACCTCAAC 2454
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2768 TCAACAAATCCGGGTACGCTTTCACAGGCATCTAACAATGAAAATACATGGAACCTCAAC 2827
Query 2455 TTTGTTGCTGCCAACGGGAAGCAAAAATGTGGGCCTAATTCAGAATTCTCATTTGGCTGC 2514
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 2828 TTTGTTGCTGCCAACGGGAAGCAAAAATGTGGGCCTAATCCAGAATTTTCATTTGGCTGC 2887
Query 2515 AAACATGCTGCTGGGGTtagtagtagtagtagtagtagGCCAATTGATAACTTTTCTAGT 2574
||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 2888 AAACATGCTGCTGGGGTTAGTAGTAGTAGTAGTAG--G-CCAATAGATAACTTTTCTAGT 2944
Query 2575 GAGAGCTCTATACCAGCATTGCATCTACTCAGCCTTATGGATCCTCGGCTAAGGTCAACC 2634
|||||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 2945 GAGAGCTCTATACCGGCATTGCATCTACTCAGCCTTCTGGATCCTCGCCTGAGGTCAACG 3004
Query 2635 ACTCCTGCTGACCGACACGGAAACACTAAATTTACTAAAAGACATTTTCCGCCAGTCAAC 2694
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3005 ACTCCCGCTGACCAACACGGAAACACTAAATTTACTAAAAGACATTTTCCGCCAGCCAAC 3064
Query 2695 CAGTCCAAGGAATTTATAGAGCTTCAAACAGGGGACTCTAGTAAGTCAGCCTACTCAACT 2754
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3065 CAGTCCAAAGAGTTTATAGAGCTTCAAACAGGGGACTCTAGTAAGTCAGCCTACTCAACT 3124
Query 2755 AAACAGATACCTTTTGATCTATACAGCAAGAGATTCGCACACGAGACTTCCCGGAAGAGT 2814
|| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 3125 AAGCAGATACCTTTTGATCTATACAGCAAGAGATTCACACAAGAGCCTTCCCGGAAGAGT 3184
Query 2815 TTCCCCATCATTCCACCTCTTGGGACGTCTTCATTTTCATTTCAAAATGCTCAAGCTTCA 2874
|||||||||| ||||||| |||||||||||||| ||||||||||||||||| | ||
Sbjct 3185 TTCCCCATCACTCCACCTATTGGGACGTCTTCACTTTCATTTCAAAATGCT-----T-CA 3238
Query 2875 TGGAGTCCTCATCA--A-GAGAAGAAAACCAAGAGAAAAGACACCTATGCTCCTGTTTAC 2931
|||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 3239 TGGAGTCCTCATCATCAAGAGAAGAAAACCAAGAGAAAAGACACCTTTGCTCCTGTTTAC 3298
Query 2932 AATACTCATGAAAAGTCTGTGTTTGCAAGCACCAACGACCAAGCGAAATTCCAGCTTCTG 2991
||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 3299 AATACTCATGAAAAGCCGGTGTTTGCAAGCAGCAACGACCAAGCGAAGTTCCAGCTGCTG 3358
Query 2992 GGAGCATCGAATTCCATGATGCTCCCTTTGAAATTTCACATGACAGATAAAGAAAAGAAA 3051
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 3359 GGAGCATCGAATTCCATGATGCTTCCTTTGAAATTTCACATGACGGATAAAGAAAAGAAA 3418
Query 3052 CAAAAGAGAAAAGCAGAGAGCTGCAACAATAATGCCTCTGCGTGG-CCTGTCAAGAACAG 3110
|||||||||||||||||||||||||| || |||||||||||| || ||||| ||||||||
Sbjct 3419 CAAAAGAGAAAAGCAGAGAGCTGCAATAACAATGCCTCTGCG-GGACCTGTGAAGAACAG 3477
Query 3111 TTCTGGATCTATTGTGTGCAGCATCAACAGAAACCCTGCTGATTTCACCATTCCTGAACC 3170
||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 3478 TTCTGGACCCATTGTGTGCAGCGTCAATAGAAACCCTGCTGATTTCACCATTCCTGAACC 3537
Query 3171 TGGGAATGTTTACATGTTAACGGGGGAACATCTTAAAGCCCGTAAACGCACAACCTTGAA 3230
|||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||
Sbjct 3538 TGGGAATGTTTACATGTTAACGGGTGAACATCTGAAAGTCCGTAAACGCACAACCTTCAA 3597
Query 3231 GAAAAAGCCAAGCT-TGTGTAAGCAGGACGCAATGAAGCAGACAAAGAAGCCGGTTTGTC 3289
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3598 GAAAAAGCCA-GCCGTGTGTAAGCAGGACGCAATGAAGCAGACCAAGAAGCCGGTTTGTC 3656
Query 3290 CAGCAACAGAAAATGCCTAA 3309
|| | ||| |||||||||||
Sbjct 3657 CACCTACACAAAATGCCTAA 3676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164647906926
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5