BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893107
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11870.2 | Symbols: | Alkaline phytoceramidase (aPHC) | chr... 1240 0.0
> AT5G11870.2 | Symbols: | Alkaline phytoceramidase (aPHC) | chr5:3825420-3827491
FORWARD LENGTH=1241
Length=1241
Score = 1240 bits (671), Expect = 0.0
Identities = 749/787 (95%), Gaps = 4/787 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTTGACGAATCAACAGATCGGGAGATGGAAAAGGAAACGAATTTTGGTTGTG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 ATGGTGTGGTTGACGAATCAACAGATAGGGAGATGGAAAAGGAAACGAATTTTGGTTGTG 360
Query 61 GGATCGTTCCTCTGTTGGTTAATCATCATGTTCATTACTCCCAAAGTTCCTCTCGATTCC 120
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GGATCGTTCCTCTGTTGGTCAATCATCATGTTCATCACTCCCAAAGTTCCTCTCGATTCA 420
Query 121 TTTCGTCATCATATCTTCGCCGATAAACGCAATTTCATGGGAGTGCCTAATACATTGAAT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTCGCCATCATATCTTCGCCGATAAACGCAATTTCATGGGAGTGCCTAATACATTGAAT 480
Query 181 GTGATGACCAACTTTCCCTTTCTTATTATTGGTGTTCTTGGTTTTGTTCTTTGCATTGGA 240
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 481 GTGATGACCAACTTTCCCTTTCTTATCGTTGGAGTTCTTGGTTTTGTTCTTTGCATTGGA 540
Query 241 GGAAGCTTCTTCAACATAAGTTTAAAAGGTGAGATCTGGGGATGGACACTGTTCTACGCA 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GGAAGCTTCTTCAACATAAGTTTAAATGGTGAGATCTGGGGATGGACACTGTTCTACGCA 600
Query 301 GGCATTGCAAGCTTGGCCTTTGGTTCTGCCTTTTATCATCTTAAACCTGATGACAACAGA 360
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 601 GGCATTGCAAGCTTGGCTTTTGGTTCTGCTTTTTATCATCTCAAACCTGATGACAACAGA 660
Query 361 ATCGTCTGGGACACTTTGCCTATATTGATTGCGTATTCGTCGCTTTTCTCTAGTTTTTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCGTCTGGGACACTTTGCCTATATTGATTGCGTATTCGTCGCTTTTCTCTAGTTTTTTG 720
Query 421 GTTGAGAGAGCGGGGGAGATAGTGGGACTAAGTTGCCTCATCGTGCTTCTATTCATATCA 480
||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||
Sbjct 721 GTTGAGAGAGCGGGGGAGAAAGTGGGACTTAGTTGCCTCATCTTGCTTCTATTTATATCA 780
Query 481 TTGT-TCAGCGTTGCTTACGCCAGAGTGTTTAATGATCTCCGGTTATGCATGACGTTCCA 539
| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 T-GTCTCAGTGTTGCTTACGCCAGAGTGTTTAATGATCTCCGGTTATGCATGACGTTCCA 839
Query 540 GTTGATTCCATGTCTGGCAATTCCCGTCATGACGGTTTTGTTACCTCCCAAATATTCTCA 599
|||||| || ||||||| |||||||||||| ||||||||||||||||||||||| | ||
Sbjct 840 GTTGATACCGTGTCTGGTGATTCCCGTCATGGCGGTTTTGTTACCTCCCAAATATACACA 899
Query 600 CTCTAGATTCTGGCTCTGGGCAACAGCGGCGTACACTATTGCCAGGATTGAGGGGCTTGC 659
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 900 CTCTAGATTCTGGCTCTGGGCAACAGCGGCGTACACTATTGCCAAGATTGAAGGACTTGC 959
Query 660 AGACAGCAAAATATACAATGCGAATCGATATATCATCAGTGGGCATTCACTGGAGCATTT 719
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGACAACAAAATATACAATGCAAATCGATATATCATCAGTGGGCATTCACTGGAGCATTT 1019
Query 720 GTGTTCAGCCGCGGCTACACTTTTACTTACCATTATGCTTT-GTTGTAGAAGCATTCGGT 778
|||||| |||| |||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 1020 GTGTTCTGCCGTGGCTACGCTTTTACTTACCATTATGCTTTTGTA-TAGAAGCATTCGGT 1078
Query 779 TAAATAG 785
| |||||
Sbjct 1079 TTAATAG 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5