BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893121

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11990.1 | Symbols:  | proline-rich family protein | chr5:38...   821    0.0  


> AT5G11990.1 | Symbols:  | proline-rich family protein | chr5:3872651-3873196 
REVERSE LENGTH=546
Length=546

 Score =  821 bits (444),  Expect = 0.0
 Identities = 518/553 (94%), Gaps = 8/553 (1%)
 Strand=Plus/Plus

Query  1    ATGGGCCtcatcatcatcatcattgcattggtcatggtcatagtagttgcatcatcaCCG  60
            |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGGGCCTCATCGTCATCATCATTGCATTGGTCATGGTCATGGTAGTTGCATCATCACCG  60

Query  61   TCCGATCAAACAGATGTCCTCACTCCACTTTGCATCAGCGAATGCTCCACGTGTCCCACC  120
            |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   TCCGATCAAACAAATGTCCTCACTCCTCTTTGCATCAGCGAATGCTCCACGTGTCCCACC  120

Query  121  ATTTGCTCTCCTCCGCCTTCTAATAAACCCTCTCCCTCCACGCCACCACCTCCGTCTCCC  180
            |||||||||||||||||  ||  ||||||||||||||||| | |||||||||||||||||
Sbjct  121  ATTTGCTCTCCTCCGCC--CT-CTAAACCCTCTCCCTCCATGTCACCACCTCCGTCTCCC  177

Query  181  TCATTGCCGTTATCCTCTTCCCCACCGCCTCCACCGCCACACAAACACTCTCCACCACCG  240
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  178  TCATTGCCGTTATCCTCTTCGCCACCGCCTCCTCCGCCACACAAACACTCTCCACCACCG  237

Query  241  CTTACACAGTCAG-GTTCACCACCGCCATTAATTACCGTCATCCATCCACCACCACCACG  299
            ||| |||| || |  |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  238  CTTTCACAATC-GCTTTCACCACCGCCGTTAATTACCGTCATCCATCCACCACCACCACG  296

Query  300  GTTTTACTATTTTGAGTCCACACCACCTCCTCCACCACTATCTCCCGATGGAAAAGGTTC  359
            |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  297  GTTTTACTATTTCGAGTCCACACCACCTCCTCCACCGCTATCTCCCGATGGAAAAGGTT-  355

Query  360  ACCACCACCATCACTACCATCGCCACCACCATCGCCAAAGGGACAGTCACAAGGGCAGCA  419
              ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  356  --CACCACCATCAGTACCATCGTCACCACCGTCGCCAAAGGGACAGTCACAAGGGCAGCA  413

Query  420  ACAGCCTCCTTACCCATTTCCTTATTTCTATTTCTACACGGCATCAAATTCAAttcctct  479
             || |||||||| |||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct  414  GCAACCTCCTTATCCATTTCCTTATTTCTATTTCTACACGGCATCAAATGCAACTCTTCT  473

Query  480  cctttcttcttcttttttgattgctcttgttgtatcttctctatctatttttcttAACGG  539
            | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  CTTTTCTTCTTCATTCTTGATTGCTCTTGTTGTATCTTCTCTATCTATTTTTCTTAACGG  533

Query  540  TTCGTTAGTGTAA  552
            |||||||||||||
Sbjct  534  TTCGTTAGTGTAA  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5