BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893151
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12260.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2983 0.0
> AT5G12260.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:3966365-3968878 FORWARD LENGTH=2121
Length=2121
Score = 2983 bits (1615), Expect = 0.0
Identities = 1809/1899 (95%), Gaps = 27/1899 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCTCAATCGAGAAGTAGAAACCTAACACTGAGATCCATGGCGATGGTATTTGCC 60
|||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct 53 ATGGTTTCTCAATCGAGAAGAAGGAACCCAACACTGAGATCCATGGCGATGGTATTTGCA 112
Query 61 CAACCCAAGAAAAACTTActtcctctccttctcttcctcttttgtatctccttcatcatt 120
||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 113 CAACCCAAGAAAAACCTACTTCCTCTCATTCTCTTCCTCTTCTGTATCTCCGTCATCATT 172
Query 121 ctcctcgttctcgtctccGAGACCACTCACTCTAACGCCGGACGAGGAACTACTTTCCGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 CTCCTCGTTCTCGTCTCCGAGACCACTCACTCTAACGCCGGACGAGGAACTACTTTCCGG 232
Query 181 CGAAATTACAATGATCCCCCTCCTTTCACTTTCCTCATCAAGGTTCTCACCTTTAACCGT 240
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 233 CGAAATTACAATGATCCCGCTCCTTTCACTTTCCTCATCAAGGTCCTCACCTTTAACCGT 292
Query 241 CTCCACTCTCTCTCCCGCTGTCTCAGATCTCTCTCCGCCGCAGACTACGGCGTTTCCGGC 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CTCCATTCTCTCTCCCGCTGTCTCAGATCTCTCTCCGCCGCAGACTACGGCGTTTCCGGA 352
Query 301 GACAGAGGACGCATTCACCTCCACGTCTACATCGATCATTTCAACCTCGCGCGGAACGAT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 353 GACAGAGGACGCATTCACCTCCACGTCTACATTGATCATTTCAACCTCGCGAGGAACGAT 412
Query 361 ACACCTGTGGAAGATAACTTG-AACAGCGCGAGGGAAATCCTAGGGTTTGTTGATAGATT 419
||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 413 ACACCTGTGGAAGATAACTTGCAA-ATCGCGAGGGAAATCCTAGGGTTTGTGGATAGATT 471
Query 420 CGAGTGGAGATTTGGGGAAAAAGTAGTTCACTATCGGACTGATAACGCTGGATTACAGGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CGAGTGGAGATTTGGGGAAAAAGTAGTTCACTATCGGACTGATAACGCTGGATTACAGGC 531
Query 480 GCAGTGGCTGGAAGCTTGGTGGCCGAGCTCAGATCACGAATTCGCCTTCGTCGTTGAAGA 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 532 GCAGTGGCTGGAAGCTTGGTGGCCGATCTCAGATCACGAATTCGCCTTCGTCGTTGAAGA 591
Query 540 TGATCTTGAGGTTTCTCCTCTTTACTATGGAATTCTGGAACGCATGATTCAT-AAATACT 598
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 592 TGATCTTGAGGTTTCTCCTCTTTACTATGGAATTCTGGAACGCCTGATTC-TCAAATACT 650
Query 599 ACTATGATACTTCTAATTTCAATCCTTCCATCTATGGAGCTTCGCTTCAGAGACCAAGGT 658
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 ACTATGATACTTCCAATTTCAATCCTTCCATCTATGGAGCTTCGCTTCAGAGACCAAGGT 710
Query 659 TTGTTCCAGGTAAACATGGGAATAAACTGCATGTAGATCCCAAAACGAATCTGCTCTTAT 718
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 711 TTGTTCCAGGTAAACATGGGAATAAACTACATGTAGATCCCAAAACGAATCTGATCTTAT 770
Query 719 ATCAGTTAGTGGGAACTTGGGGACAGCTTCTCTTCCCAAAACCGTGGAAAGAGTTCAGAC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 ATCAGTTAGTGGGAACTTGGGGACAGCTTCTCTTCCCAAAACCGTGGAAAGAGTTCAGAC 830
Query 779 TATGGTATGACGAGCACAAGTCGAATGGCAAGAAGCCTTTCCTTGATGGCATGGTGACAA 838
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 831 TATGGTATGATGAGCACAAGTCGAAAGGCAAGAAGCCTTTCCTTGATGGCATGGTGTCAA 890
Query 839 ATGGATGGTACAAGAGGCTGGGAGAACGAATATGGACACCTTGGTTCATAAAGTTTGTTC 898
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ACGGATGGTACAAGAGGCTGGGAGAACGAATATGGACACCTTGGTTCATAAAGTTTGTTC 950
Query 899 ATTCTCGTGGCTATTTTAACATCTATACCAGTTTCCCGAATGAGGGGGCT-TTAAGTGTT 957
|||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 951 ATTCTCGTGGTTATTTTAACATCTATACAAGTTTCCCGAATGAGGGGGCTCTTA-GTGTC 1009
Query 958 TCCCACAGGGATGCTGGTGTTAACTATGGAAAAACCGCTGGGCCAGACTCACAGTTATTG 1017
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1010 TCTCACAGGGATGCTGGTGTTAACTATGGAAGAACCGCTGGGCCAGACTCACAGTTATTG 1069
Query 1018 AATAAAAGTGCTCTCAGTTCTGATTCTCTGAAACTCCAACCCTTGAGCAACCTTAAGTGG 1077
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1070 AATAAAAGTTCTCTCAGTTCTGATTCTCTGAAGCTCCAACCCTTGAGCAACCTTAAGTGG 1129
Query 1078 TACGATTTCTGTTTCAGTGAAGTTGTTCCTGGTAGAGTTGTGAGAAACCTGAATGAACTT 1137
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1130 TACGATTTCTGTTTCAGTGAAGTTGTTCCCGGTAGAGTTGTGAGAAACCTGAATGAACTT 1189
Query 1138 GGCACCATTCTTCCTTCCGTGCAGAGTGAGAAAACCATAATTCTGGTCAGTCTATATGGT 1197
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1190 GGCACCATTCTTCCTTCTGTGCAGAGAGAGAAAACCATAATTCTGGTCAGTCTATATGGT 1249
Query 1198 GCAGAGAAGATGTTCACCAGGAACTTACTCTGCCATTTCGAGAAGCTTAATACTCTAAAC 1257
||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1250 GCAGACAAGATGTTCATCAGGAACTTACTCTGCCATTTCGAGAAGCTTAATATTCAAAAC 1309
Query 1258 CACATTTTTATAGGCCCTAGCTCTGAGTTGTTCTATGATCTTTCAAGAAGGGGACATCCT 1317
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1310 CACATTTTCATAGGCCCTAGCTCTGAGTTGTTCCACGATCTTTCAAGAAGGGGACATCCT 1369
Query 1318 GTGATTGATGCGGATATGCTTCTCGACAAGCTGATCAAAAGCAAAACTTCTTATCCAAAC 1377
|| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 1370 GTAATTGATGCGGATATGTTTCTAAACAAGTTGATCAAAAGCAAAACTTCTTATCCAAAC 1429
Query 1378 TCAGCGAAGGAGGCTCTGGGCAATGCTTACGTTGTCAAGAAATGCTTAGAACTTGGATAC 1437
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1430 TCAGTGAAGGAGGCTCTGGGCAATTCTTACGTTGTCAAGAAATGCTTAGAACTTGGATAC 1489
Query 1438 AGCACCTGGGCATTTTCAAGTAACTCGCTTTTGGTTGATAAAGGTCCTCTCCTTGACAGA 1497
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1490 AGCACCTGGGCATTTTCAAGTAATTCGCTTTTGGTTGATAAAGGTCGTCTCCTTGACAGA 1549
Query 1498 GTTAGCTCAGAGTACGACATCTATATCGGGGAAAGCTCTGGAATTTTGATTGTTCAATCT 1557
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1550 GTCAGCTCAGATTACGACATCTATATCGGGGAGAGCTCTGGAATTTTGATTGTTCAATCT 1609
Query 1558 TCATCAGTCACTCAAAAGTTATGGAGCAATGAGTTTCTACACAGCATCACATCCACAGCA 1617
||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1610 TCATCAGTCACTCAAAAGTTATGGAGCAATGAGTTTCTACACAGCAT----T-----GCA 1660
Query 1618 ACTAAGAATCCGTCCCTAAATCAAAGTCTAGATTATATTCATCTAGTGAAAGAGCTAGTG 1677
| || || ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1661 --T------CC--CCA-AAA-CAAAGTCTAGATTTTATTCATCTAGTGAAAGAGCTAGTG 1708
Query 1678 GAGCAAAAGGGCAAGAGGATTAAGACCATAGAGACAATGGATATTGCAGAAAATACCAAT 1737
||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||
Sbjct 1709 GAGCAAAAGGGCAAGAGGATTAAGACCGTAGAGACGATGAATATTGCAGAAAATACCAAT 1768
Query 1738 GCCAACAGCGTAAACCAATCGTTGGGAGATGGCAAGCCGGTGGTGTATTGGTCTCCTGAG 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 GCCAACAGCGTAAACCAATCGTTGGGAGATGGCAAGCCGGTGGTGTATTGGTCTCCTGAG 1828
Query 1798 GTTGCTCCCAATATGATTCGGTCAAAGCTAGAAGAGTTGAACCTGTGGCTCATCGATGAC 1857
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1829 GTTGCTCCCAATATGATTCGGTCAAAGCTAGAAGAGTTGAGCTTGTGGCTCATCGATGAT 1888
Query 1858 GATCTCTCTTGCAAGGCCGTGGTTTGTCATAATTCATAA 1896
||||||||||||||||||||||||||||||| |||||||
Sbjct 1889 GATCTCTCTTGCAAGGCCGTGGTTTGTCATAGTTCATAA 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5