BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893175
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12460.1 | Symbols: | Protein of unknown function (DUF604) ... 1332 0.0
> AT5G12460.1 | Symbols: | Protein of unknown function (DUF604)
| chr5:4043057-4044583 FORWARD LENGTH=1326
Length=1326
Score = 1332 bits (721), Expect = 0.0
Identities = 825/874 (94%), Gaps = 11/874 (1%)
Strand=Plus/Plus
Query 4 ATGACCCATAAACTCTTTGCGCCTCTTGACCTTACTTTCTCCTCCTCTTCATCATCTTCC 63
||||||||||| || ||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1 ATGACCCATAACCTTTTTGCGCCTCTTGACCTTAGTTTCTCCTCCTCTTCATCTTCCTCC 60
Query 64 TCGTCTTCAGTATCATTGTCCTTGCAAATTACAAGAGAGTCTCCTACAAATATCAGCCAT 123
|| || ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 61 TCCTCGTCAGTATCATTGTCCTTGCAAATAACAAGAGAGCCTCCAACAAATATCAGCCAT 120
Query 124 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180
Query 184 CCTTGGTGGAGACCAAACATCACAAAAGGATATGTTTTCCTCGAAAGACCACCTGGCCGT 243
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 181 CCTTGGTGGAGACCAAACATTACAAAAGGATATGTCTTCCTCGAAAGACCACCTGGCCCT 240
Query 244 GATCTCTTGCCTTGGCCT-AACCAATCTCCTCCCTTTTCTGTCAACAAAGAATCATTCAT 302
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 241 GATCTCTTGCCTTGGCCTCAA-CAATCTCCTCCCTTCTCTGTCAACAAAGAGTCATTCAT 299
Query 303 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCTTGAGTCTTTTAAGAA 362
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCAAGAGTCTTTTAAGAA 359
Query 363 GGCTTCCAAAGAGACAAGATGGTTTGTGATAGCAGATGATGATACTCTCTTCTTCTTGGA 422
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GGCGTCCAAAGAGACAAGATGGTTTGTGATAGGAGATGATGATACTCTCTTCTTCTTGGA 419
Query 423 CAATTTGGTCAAAGCTCTTGACAGGTATGACCACAAGAAGCACTATTACATCGGAATGAA 482
||||||||| |||||||| ||| | ||| |||||||||||||||||||| ||||||||||
Sbjct 420 CAATTTGGTGAAAGCTCTCGACCGATATAACCACAAGAAGCACTATTACGTCGGAATGAA 479
Query 483 CTCGGAAAACGTTTGGTCCAACGCGATTTTCGCTTTCGACATGGGATATGGAGGCGGCGG 542
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CTCCGAAAACGTTTGGTCCAACGCGATTTTCGCTTTTGACATGGGATATGGAGGCGGCGG 539
Query 543 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599
Query 603 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659
Query 663 TGATCTTACTTTAGAGAAAGGAATGCACCAGATTGATCTACACGGTGACATATCAGGTCT 722
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 660 TGATCTTACTTTAGAGAAAGGCATGCACCAGAATGATCTACACGGTGACATATCAGGTCT 719
Query 723 CTTATCAGCTCATCCACAGTCTCCTCTTATCAGCCTTCACCATTTCGATGTCATAGACCC 782
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 720 GTTATCAGCTCATCCTCAGTCTCCTCTTATCAGCCTCCACCATTTCGATGTAATAGACCC 779
Query 783 GATTTTTCCAGGCATGACCCGCCAGCAATCCGTGAACCACCTCATGAAAAC-G-GAT--C 838
||| || |||||||||| |||||||||||||||||||||||||||| |||| | || |
Sbjct 780 GATATTCCCAGGCATGAACCGCCAGCAATCCGTGAACCACCTCATGGAAACCGCGAAAAC 839
Query 839 --A---GTCCCGTGTCTTGCAACAAACAATATGT 867
| ||||||||||||||||||||||||||||
Sbjct 840 CGACCAGTCCCGTGTCTTGCAACAAACAATATGT 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5