BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893177
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:43... 1485 0.0
AT5G10240.1 | Symbols: ASN3 | asparagine synthetase 3 | chr5:32... 126 3e-28
> AT5G13520.1 | Symbols: | peptidase M1 family protein | chr5:4341948-4344671
REVERSE LENGTH=2120
Length=2120
Score = 1485 bits (804), Expect = 0.0
Identities = 868/900 (96%), Gaps = 0/900 (0%)
Strand=Plus/Plus
Query 3 GCAAGGGGAGGAGCTCTTTGGAGATTACGAGTGGGAGAGGTTTGACTTACTGGTGCTACC 62
|||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 868 GCAAGGGGAGAAGCTGTTTGGAGATTACGAGTGGGAGAGATTTGACTTACTGGTGCTGCC 927
Query 63 TCCGAGTTTTCCTTATGGAGGTATGGAGAATCCAAGAATGGTTTTCCTGACGCCTACTGT 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TCCGAGTTTTCCTTATGGAGGTATGGAGAATCCAAGAATGGTTTTCCTGACGCCTACTGT 987
Query 123 TATCAGAGGAGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGGAC 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TATCAAAGGAGACGCCACTGGAGCTCAAGTTGTAGCTCACGAGCTCGCACATAGCTGGAC 1047
Query 183 TGGGAATTTGATCACTAACATCAACAACGAACATTTCTGGTTGAATGAGGGATTTACAAC 242
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1048 TGGGAATTTGATCACTAATATCAACAATGAACACTTCTGGTTGAATGAGGGATTTACAAC 1107
Query 243 TTACGCAGAGAGGAGAATTGTGGAAGTTGTCCAAGGGGCGGATAGAGCTACTCTGAATAT 302
|||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||| ||
Sbjct 1108 TTACGCAGAGAGGAGAATTGTGGAGGTTGTTCAAGGGGCGGATATAGCTACTTTGAACAT 1167
Query 303 TGGCATTGGTTGGAGGGGTTTAACTGATGAAATGGAACGGTTTAAGGACAACTTGGAGTG 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TGGCATTGGTTGGAGGGGTTTAACTGATGAAATGGAACGGTTTAAGGACAACTTGGAGTG 1227
Query 363 CACTAAACTGTGGAACAAACAAGAAGGTGTTGATCCAGATGATGTATATTCTCAGGTCCC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CACTAAACTGTGGAACAAACAAGAAGGTGTTGATCCAGATGATGTATATTCTCAGGTCCC 1287
Query 423 ATATGAAAAAGGATTCCAATTTGTGTTGCGAATTGAGCGCCAGATTGGAAGGACTGCATT 482
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1288 ATATGAAAAAGGATTCCAATTTGTGTTGCGAATTGAACGCCAGATTGGAAGAACTGCTTT 1347
Query 483 TGACGAATTCCTCAAGATATACATTGCTACTTTCAAGTTCAAGTCAATCGATGCAAACAC 542
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1348 TGACGAATTCCTCAAGAAATACATTGCTACTTTCAAGTTCAAGTCAATCGATACAAACAC 1407
Query 543 ATTTCTTGAATTCCTGAAAGCAAACATCCCTGGCATAGAGAAAGAGATCAACCTACAGCT 602
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1408 ATTTCTTGAATTCCTGAAAGCAAACATCCCTGGCATAGAGAAAGAGATCAATCTACAGCT 1467
Query 603 GTGGACTGAGGGCGTTGGTATACCTGAGGATGCATATGAACTGGCCTCAACCATTTACAC 662
|||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 1468 GTGGACTGAGGGCGTTGGTATACCAGAGGATGCATATGAACCAGTCTCAACCATTTACAC 1527
Query 663 AAAGATCATATCCCTGGCAAAAGAGTTTAAGGAAGGAAGGATGCCAGGTGAGGATGATGG 722
|||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1528 AAAGATCATATCCCTGGCGAAAGAGTTTAAGGAAGGAAAGATGCCAAGTGAGGATGATGT 1587
Query 723 TGCTGAGTGGAACGGACAGGAATGGGAGCTGTACTTGGAGAATCTTACTAAATCATGTGA 782
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1588 TGCTGAGTGGAACGGACAGGAATGGGAGCTGTACTTGGAGAATCTTCCTAAATCATGTGA 1647
Query 783 ACCTTCTCAGGTCATGGCCTTGGACAAGCGGTACAGACTAGCAGAATCGAAGGACTATGA 842
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1648 ACCTTCTCAGGTCATGGCCTTGGACAAGCGGTACAGACTGGCAGAATCGAAAGACTATGA 1707
Query 843 AGTGAAGGTCTCGTTTCTGCAGCTTGCAGTCGCATCCAAGTGCAGAGAGTACCATGGGGA 902
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1708 AGTGAAGGTCTCGTTTCTGCAACTTGCAGTCACATCCAAGTGCAGAGAGTACCATGGGGA 1767
> AT5G10240.1 | Symbols: ASN3 | asparagine synthetase 3 | chr5:3212689-3216466
REVERSE LENGTH=2030
Length=2030
Score = 126 bits (68), Expect = 3e-28
Identities = 70/71 (99%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 896 ATGGGGAGGATAAAACCGAAGATTCTCGTCCCGAGAAGCTACAGAAACTAGCAGAGAAGA 955
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 ATGGGGAAGATAAAACCGAAGATTCTCGTCCCGAGAAGCTACAGAAACTAGCAGAGAAGA 1768
Query 956 CTCCAGCCATT 966
|||||||||||
Sbjct 1769 CTCCAGCCATT 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5