BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893182
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12840.1 | Symbols: HAP2A, EMB2220, ATHAP2A, NF-YA1 | nuclea... 1230 0.0
> AT5G12840.1 | Symbols: HAP2A, EMB2220, ATHAP2A, NF-YA1 | nuclear
factor Y, subunit A1 | chr5:4050840-4053534 REVERSE LENGTH=1275
Length=1275
Score = 1230 bits (666), Expect = 0.0
Identities = 772/822 (94%), Gaps = 12/822 (1%)
Strand=Plus/Plus
Query 1 ATGCAATCGAAACCGGGAAGAGAAAACGAAGAGGAAGTC---AATCACCATGCTGTTCAG 57
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 150 ATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAG 209
Query 58 CAACCGATGATGTATCCAGCAGATCCCTGGTGGAAAATCAACTCCTTTGGTGTAGTTCCT 117
|| |||||||||||| ||||| ||||||||||||| ||||||||||||||| || |||
Sbjct 210 CAGCCGATGATGTAT---GCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCT 266
Query 118 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCGAATGGTTCC 177
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 267 CAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGGATTGCCCCAATGGTTCC 326
Query 178 GAATCAAACGATGTTCATTCAGCATCTGAAGATGGTGCGTTGAATGGTGAAAATGACGGC 237
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 327 GAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGC 386
Query 238 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCATGGAATGGAA 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 387 ACTTGGAAGGATTCACAAGCTGCAACTTCCTCTCGTTCAGTAGATAATCACGGAATGGAA 446
Query 298 GGGAATGACCCGGCACTTTCTATTCGTAATATGCATGATCAGCAACTTGTACAACCACCA 357
|| |||||||| || || ||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 447 GGAAATGACCCAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCA 506
Query 358 GAGCTTGTTGGACATTATATCGCTTGTGTCCCAAATCCATATCAGGATCCATATTATGGC 417
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 507 GAGCTTGTTGGACACTATATCGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGG 566
Query 418 GGAATGATGGGAGCATATGGTCATCAGCCATTGGGTTTTCGACCATATCTTGGAATGCCT 477
||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 567 GGATTGATGGGAGCATATGGTCATCAGCAATTGGGTTTTCGTCCATATCTTGGAATGCCT 626
Query 478 CGTGAAAGAACAGCTCTGCCACTTGACATGACACAAGAGCCCGTTTATGTGAATGCAAAA 537
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 627 CGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAG 686
Query 538 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGTTAGAAAGGAAA 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 687 CAGTACGAGGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAA 746
Query 598 GTCATCAGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCGATGAGAAGG 657
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 747 GTCATCCGGGACAGAAAGCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGG 806
Query 658 GCACGAGCTAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTGGAAGCAGGAGAGGGTGCA 717
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 807 GCACGAGCGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCA 866
Query 718 GGA---AG-GA--GAGAAAGGGGTTCAGCAACGAACTCATCAGGCTCTGAACAAGTTGAG 771
||| || || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 867 GGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTCTGAACAAGTTGAG 926
Query 772 ACAGACTCTAATGAGACCCTGAATTCGTCAGGTGCACCATAA 813
|||||||||||||||||||||||||| || ||||||||||||
Sbjct 927 ACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAA 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5