BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893202

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like...  76.8    1e-13


> AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 
1 | chr1:18098095-18101623 FORWARD LENGTH=1966
Length=1966

 Score = 76.8 bits (41),  Expect = 1e-13
 Identities = 44/45 (98%), Gaps = 1/45 (2%)
 Strand=Plus/Minus

Query  177  GCTAGGTTTTCGAGAA-AGAGTTGAGAAAGAGGCGAAAAACCCTA  220
            |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  68   GCTAGGTTTTCGAGAAGAGAGTTGAGAAAGAGGCGAAAAACCCTA  24



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18850405875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5