BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893233
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13290.2 | Symbols: SOL2, CRN | Protein kinase superfamily p... 1947 0.0
> AT5G13290.2 | Symbols: SOL2, CRN | Protein kinase superfamily
protein | chr5:4252842-4254436 REVERSE LENGTH=1509
Length=1509
Score = 1947 bits (1054), Expect = 0.0
Identities = 1160/1211 (96%), Gaps = 7/1211 (1%)
Strand=Plus/Plus
Query 5 AGCAaagaag--aagaagaagaagaaATGGA--T-GTAGTAGCAACACTATCTCTCTGCT 59
||||| |||| ||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 218 AGCAATGAAGCAAAGAAGAAGAAGAAATGGATGTAGTAGTAGCAACACTATCTCTCTACT 277
Query 60 CTTATTCTTCTTTTTAGTCTTCTTTTCAAGAACAAGCACAAGTACAAGTTGTCGTCGAAG 119
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 278 CTTATTATTCTTCTTAGTCTTCTTTTCAAGAACAAGCACAAGTACAAGTTGTCGTAGAAG 337
Query 120 AACTGTGAAACACTTGTCCACAACTTCAACATCATCTACACCACTCGAATCAAGAATCAC 179
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 338 AACTGTTAAACACTTATCCACAACTTCAACATCATCTACACCACTTGAATCAAGAATCAC 397
Query 180 TTCCAAGGTTATTGTTG-TCAGCATCGTTTCAGGGATTTTAACCGGGTTGGTTTCGGCTT 238
|||||||||||||| || | || ||||| |||||||||||||| ||||||||||| ||||
Sbjct 398 TTCCAAGGTTATTG-TGATTAGTATCGTCTCAGGGATTTTAACAGGGTTGGTTTCAGCTT 456
Query 239 TGGTGTTAACTTTCTTGGTTCGTAGCATTGTCAAATTCATGAAACAGACGCCAATTCTCA 298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TGGTGTTAGCTTTCTTGGTTCGTAGCATTGTCAAATTCATGAAACAGACGCCAATTCTCA 516
Query 299 AAGGTCCTGTGGTGTTTTCTCCTAAGATTACTCCTAAATCTCTTCACGCAGCTCTCGGTA 358
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 517 AAGGTCCAGTGGTGTTTTCTCCTAAGATTACTCCTAAATCTCTCCACGCAGCTCTCAGTA 576
Query 359 ATGGTATTCAGTTGCTTGGCTCAGACCCTAATGGTAAATACTATAAGATGGTACTTGATA 418
|||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 577 ATGGTATTCAGTTGCTTGGCTCTGACCTTAATGGTAAATACTATAAGATGGTTCTTGATA 636
Query 419 ATGGTCTAGTGGTTGCAGTCAAGAGACTAGGCTCACTTGAAGGAATTGGTTCACCAGAAA 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 637 ATGGTCTAGTGGTTGCAGTCAAGAGACTAGGCTCACTTGAAGGAGTTGGTTCACCAGAAA 696
Query 479 GTAGTAGTAGCAAGTCGGTTAAGAGAAGGTTGCAGAAGGAACTTGAGCTTCTTGCTGGGT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GTAGTAGTAGCAAGTCGGTTAAGAGAAGGTTGCAGAAGGAACTTGAGCTTCTTGCTGGGT 756
Query 539 TAAGGCATAGGAACCTTATGAGTTTACGGGCTTATGTTCGCGAATCCGATGAGTTCTCTC 598
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 757 TAAGGCATAGGAACCTTATGAGTTTACGAGCTTATGTTCGCGAATCTGATGAGTTCTCTC 816
Query 599 TCGTCTATGATTATATGCCGAATGGTAGCCTTGAGGATGTGATGCATAAGGTTAGAACGA 658
| ||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 817 TGGTCTATGATTACATGCCTAATGGTAGCCTTGAGGATGTGATGAATAAAGTTAGAACGA 876
Query 659 AAGAGGTAGAGCTTAGATGGGAGATTAGGCTTAGAGTTGCAGTTGGAATTGTGAAAGGGC 718
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 AAGAGGTAGAGCTTGGATGGGAGATTAGGCTTAGAGTTGCAGTTGGAATTGTGAAAGGGC 936
Query 719 TTCAGTATCTTCATTTCAGTTGTGAGACACAGATTCTTCATTATAACTTGAAACCTACAA 778
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 937 TTCAGTATCTTCATTTCAGTTGTGAGACCCAGATTCTTCATTATAACCTGAAACCTACAA 996
Query 779 ATGTGATGTTGGATTCTGAGTTTGAGCCTCGGCTTGCTGATTGTGGATTGGCTAAGATCA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 997 ATGTGATGTTGGATTCTGAGTTTGAGCCTCGGCTTGCTGATTGTGGATTGGCCAAGATCA 1056
Query 839 TGCCTAGCTCACACACAGCGGTATCTTGCTACTCTGCTCCTGAGTCTTCTCAAAGTAACA 898
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1057 TGCCTAGTTCACACACAGCGGTATCTTGCTACTCTGCCCCTGAGTCCTCTCAAAGTAACA 1116
Query 899 GATACACAGACAAAAGCGACATATTCAGCTTCGGGATGATATTGGGTGTTCTTTTAACCG 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1117 GATACACAGACAAAAGCGACATATTCAGCTTTGGGATGATATTGGGTGTTCTTTTAACCG 1176
Query 959 GAAGAGACCCGACCCACCCGTTCTGTGAAGAGTCTGCAAGCGGAGGCAGCTTAGGACAGT 1018
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1177 GAAGAGACCCGACCCACCCGTTCTGCGAAGAGTCTGCAAGCGGAGGTAGCTTAGGACAGT 1236
Query 1019 GGCTGAAACATTTACAACAATCCGGGGAAGCACGTGAAGCATTAGATAAGACTATTCTAG 1078
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 1237 GGCTGAAACATTTACAACAGTCTGGGGAAGCACGAGAAGCATTAGATAAGACTATTCTTG 1296
Query 1079 GAGAGGAAGTGGAGGAAGACGAGATGTTAATGGCTTTAAGAATCACCATTATCTGCCTTT 1138
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1297 GAGAGGAAGTGGAGGAAGACGAAATGTTAATGGCTTTAAGAATCACCATCATCTGCCTTT 1356
Query 1139 CTGACTTTCCGGCAGACCGGCCTTCAAGTGATGAGCTTGTCCACATGCTTACACAACTGC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CTGACTTTCCGGCAGACCGGCCTTCAAGTGATGAGCTTGTCCACATGCTTACACAACTGC 1416
Query 1199 ACAGCTTTTAG 1209
|||||||||||
Sbjct 1417 ACAGCTTTTAG 1427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5