BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893247

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G13470.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   715    0.0  


> AT5G13470.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:4318524-4319924 
FORWARD LENGTH=722
Length=722

 Score =  715 bits (387),  Expect = 0.0
 Identities = 459/492 (93%), Gaps = 12/492 (2%)
 Strand=Plus/Plus

Query  1    ATGTCACTGGTCGACTACGACGATTCTTCATCCGACGACGATGTCTTAGCCGCCGAGGAG  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  39   ATGTCACTGGTCGACTACGACGATTCTTCATCCGACGACGATGTTTTAGCCGCCGAGGAG  98

Query  61   AAACCTCTCCCACAACCGCAACCGCAACCGCAACAGCGTCGGGTTTCTCCAGCTGAATCT  120
            ||||||||||||| |  |  | ||| |    || |||||| ||||||||||||| |||||
Sbjct  99   AAACCTCTCCCAC-A--G--A-CGC-A----AA-AGCGTCTGGTTTCTCCAGCTCAATCT  146

Query  121  TTTCCTCCAATTAGGCAGAGATGTGAGCAGGAAGAGATTGTTGAGAAGCTACCAGATGCT  180
            ||||||||||  |||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct  147  TTTCCTCCAAAGAGGCAGAGATTTGAGCAGGACGAGAGTGTTGAGAAGCTACCAGATGCT  206

Query  181  TTGCTTCTTCTGGAGTCACCCACACTTGCACAGGTGACTGGCGGTGACCATGCTTCCGTT  240
             ||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||
Sbjct  207  CTGCTTCTTCTGGAGTCACCGACACTCGCTCAGGTGACTGGCGGAGACCATGCTTCCGTT  266

Query  241  GTTGCAGCTGCAATGGCCCAGAGTGCAGTACGGAAGAGAGACTTGAATGGGAATGCTTCT  300
            |||||||||||||||||  |||||||| || ||||||||||||||| |||||||||||||
Sbjct  267  GTTGCAGCTGCAATGGCTGAGAGTGCATTAAGGAAGAGAGACTTGAGTGGGAATGCTTCT  326

Query  301  TCTCTTCCTCGTCGTCCCAAGCTACCAAGAGGAAATTTGCCTCATTCCAAGAATTATCCT  360
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  327  TCTCTTCCTCGTCGTCCCAAGCTACCAAGAGGAAATTTGCCTCATTCAAAGAATTATCCT  386

Query  361  GAAACTTTGGGTAATGTGCTTGTGCCTCCTCAGCTCAAGGGAAGGAGCAATGTTGCTACA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  387  GAAACTTTGGGTAATGTGCTTGTGCCTCCTCAGCTCAAGGGAAGGAGCAATGTTGCTACA  446

Query  421  GAGGATATGAGCAGGCTTTTTGTGAAAAAACGGCAAGACTCCTCCAAGGCAAGATCTCCA  480
            |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct  447  GAGGATATGAGCAGGCTTTTTGTGAAAAAACGGCAAGACTCCACCAAGGCAAAATCTCCA  506

Query  481  GATCAGGAATAG  492
            ||||||||||||
Sbjct  507  GATCAGGAATAG  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5