BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893283
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13825.1 | Symbols: | unknown protein; Has 30201 Blast hits... 560 3e-159
> AT5G13825.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4464967-4466052
REVERSE LENGTH=590
Length=590
Score = 560 bits (303), Expect = 3e-159
Identities = 353/377 (94%), Gaps = 4/377 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCTGAATCTACTAGTTCTGGACATCGACGACAGAAACGTCCACGGCAGAGGCGA 60
|||||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||
Sbjct 84 ATGGAGGCTGAATCTAGTAGTTCTGGACATCGACGACAGAAACGTCCACGACAAAAGAGA 143
Query 61 TCGTCGGAGGTGATCAGTTATGAGAACAGCGTTGCAAATCTGTCAAAG-GAAGGTAAAGA 119
|| ||||| |||||||||||||||| |||||||||||||||||| ||| ||||| |||||
Sbjct 144 TCATCGGATGTGATCAGTTATGAGAGCAGCGTTGCAAATCTGTC-AAGAGAAGGGAAAGA 202
Query 120 GACGTTGATGATTGTGAGTCGCAGAAGGCAACTGAATAAAATCCCCAATACGTCTTGTAC 179
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||
Sbjct 203 GACGTTGATGATTGTGAGTCGCAGAAGACAATTGAATAAAATCCCCAATACGTCTTCTAC 262
Query 180 TGTGTTTGATAATACATGTCCTCGTTACAACTGGCTTCGTTCTGGTTGGATCGCTGAGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TGTGTTTGATAATACATGTCCTCGTTACAACTGGCTTCGTTCTGGTTGGATCGCTGAGGA 322
Query 240 GCGTCTTAAGCCCCATGACCGACTCTACCGGTATTTTTACGATCCATTAGGGCAAATGTA 299
|||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 323 GCGTCTTAAGGTCTATGACCGACTCTACCGGTATTTTTATGATCCATTAGGGCAAATGTA 382
Query 300 TGGTACTCGGGGAGAAGTGGATCAAATCTATGCAGATATTGAAAAATCGCGCGCAATAGT 359
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TCATACTCGTGGAGAAGTGGATCAAATCTATGCAGATATTGAAAAATCGCGCGCAATAGT 442
Query 360 CGTTTTC-GACAAGTAA 375
||| ||| || ||||||
Sbjct 443 CGTCTTCCGA-AAGTAA 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5