BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893317
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14130.1 | Symbols: | Peroxidase superfamily protein | chr5... 1369 0.0
> AT5G14130.1 | Symbols: | Peroxidase superfamily protein | chr5:4558704-4560067
REVERSE LENGTH=1190
Length=1190
Score = 1369 bits (741), Expect = 0.0
Identities = 917/1001 (92%), Gaps = 16/1001 (2%)
Strand=Plus/Plus
Query 1 ATGGATACTCGTAGGGATGATGCAACAAAACCCATGACGATGTGGTT-TTCGGGGATGCT 59
||||||| |||||| |||||||||| |||||| |||| ||||||||| || ||||||||
Sbjct 40 ATGGATATTCGTAGTGATGATGCAAAAAAACCTATGATGATGTGGTTCTT-AGGGATGCT 98
Query 60 GTTGTTTTCCATGGTGGCCGAGTCAAATGCCCAACTGTCAGAGAATTACTACGCCTCGAC 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 99 GTTGTTTTCCATGGTGGCCGAGTCAAATGCTCAACTGTCAGAGAATTACTACGCCTCGAC 158
Query 120 TTGTCCTAACGTCGAGCTCATCGTTAAGCAGGCGGTTACTACAAAATTCCAACAAACTCC 179
||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 159 ATGTCCTAGCGTAGAGCTCATCGTTAAGCAGGCGGTTACTACAAAATTCAAACAAACT-G 217
Query 180 T-ACGACGGCTCCGGCAACGTTACGGATGTTCTTTCACGACTGCTTCGTCGAGGGATGTG 238
| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 218 TCACAACGGCTCCTGCAACGTTGCGGATGTTCTTTCACGACTGCTTCGTCGAGGGATGTG 277
Query 239 ATGCGTCTGTGTTTATAGCATCTGACAATGAAGACGCAGAGAAAGACGC-GCCGGACAAT 297
||||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||
Sbjct 278 ATGCGTCTGTGTTTATAGCATCTGAGAATGAAGACGCAGAGAAAGACGCAGATG-ACAAT 336
Query 298 AAATCTCTCCCCGGAGACGGATTTGACACTGTGATTAAAGCTAAAACCGCTGTAGAATCT 357
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 337 AAATCTCTCGCCGGAGACGGATTTGACACCGTGATTAAAGCTAAAACCGCTGTAGAATCT 396
Query 358 CAATGTCCCGGCGTTGTGTCATGTGCCGATATACTAGCTCTCGCCGCAAGAGACGTTGTC 417
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 397 CAATGTCCCGGAGTTGTGTCATGTGCCGATATACTAGCTCTCGCCGCTAGAGACGTCGTC 456
Query 418 GT-CATCGTTGGAGGGCCAGAGTTTAAGGTGGAGCTAGGTAGACGAGACGGGCTCGTGTC 476
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 457 GTGC-TCGTTGGAGGGCCAGAGTTTAAGGTGGAGCTAGGGAGACGAGACGGGCTCGTGTC 515
Query 477 GCAAGCATCTAGAGTGACCGGGAAGTTACCTGAACCAGGGCTTGACGTGAGAGGTCTAGT 536
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 516 GAAAGCGTCTAGAGTGACCGGCAAGTTACCTGAACCAGGGCTTGACGTGAGAGGTCTAGT 575
Query 537 CCAGATCTTTGCTAGTAACGGGCTTTCATTGACCGACATGGTCGCTCTTTCAGGCGCACA 596
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 576 CCAGATCTTCGCTAGTAACGGGCTTTCATTGACCGACATGATCGCTCTTTCAGGCGCACA 635
Query 597 TACCATTGGATCCTCTCACTGCAACCGTTTCGCCAACCGTCTCCACAACTTCTCGACGTT 656
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 636 TACAATTGGATCCTCTCACTGCAACCGTTTCGCCAACCGTCTCCACAATTTCTCGACGTT 695
Query 657 CCTGCCCTTGGACCCTACGATCGACCCGGCCTACGCACAGCAGCTGACAAAAGACTGCTC 716
| |||| ||||||||||||| ||||||| |||||| |||||||||| | ||| ||||||
Sbjct 696 CATGCCAGTGGACCCTACGATGGACCCGGTCTACGCTCAGCAGCTGATACAAGCCTGCTC 755
Query 717 TAACCCCGATCCTGACTTC-GTCGT-GCCCCTGGACCCAACCACCACAGATACCTTCGAC 774
| ||||| | || || | | || || | | || ||| ||| ||| |||||||||||||
Sbjct 756 TGACCCCAACCCAGA-TGCTGTAGTAGACATTG-ACCTAACGTCCAGAGATACCTTCGAC 813
Query 775 AATAGCTATTTCCAGAACCTAGTGGCTCG-AAGAGGCCTTCTCACCTCCGATCAAGCTCT 833
|||||||| | ||||||||| |||||||| || ||| ||| |||||||||||||||||||
Sbjct 814 AATAGCTACTACCAGAACCTCGTGGCTCGGAA-AGGACTTTTCACCTCCGATCAAGCTCT 872
Query 834 GTTTAACGATCTCTCGTCTCAGTCCACGGTGATGAGGTTTGCTAACAACGCCGAAGAATT 893
|||||||||||||||||||||| | |||||| | ||||||||||||||||| ||||||||
Sbjct 873 GTTTAACGATCTCTCGTCTCAGGCTACGGTGGTCAGGTTTGCTAACAACGCTGAAGAATT 932
Query 894 CTACGGTGCTTTTAGCTCTGCTATGAGGAATCTTGGCCGCGTTGGTGTTAAGGTTGGGAG 953
|||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 933 CTACAGCGCTTTTAGCTCTGCTATGAGGAATCTTGGCCGCGTTGGGGTTAAGGTTGGGAA 992
Query 954 -CGAAGGAGAGATTCGAAGGGACTGCTCTGCTTTTAACTAG 993
| |||| |||||||||||||||||||||||||||||||||
Sbjct 993 TC-AAGGCGAGATTCGAAGGGACTGCTCTGCTTTTAACTAG 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5