BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893345
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14400.1 | Symbols: CYP724A1 | cytochrome P450, family 724, ... 1271 0.0
> AT5G14400.1 | Symbols: CYP724A1 | cytochrome P450, family 724,
subfamily A, polypeptide 1 | chr5:4643521-4646382 FORWARD
LENGTH=1263
Length=1263
Score = 1271 bits (688), Expect = 0.0
Identities = 744/772 (96%), Gaps = 0/772 (0%)
Strand=Plus/Plus
Query 1 ATGTTCATACTTCAAAACGAAGGGAAGTTATTTACTTCGGATTATCCGAAAGCGATGCAT 60
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 160 ATGTTCATACTTCAAAACGAAGGGAAGTTGTTTACATCGGATTATCCAAAAGCGATGCAT 219
Query 61 GACATTCTCGGCAAATATTCCCTCCTATTAGCCACCGGAGAAATTCACAGGAAACTAAAA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 220 GACATTCTCGGCAAATATTCCCTTCTATTAGCCACCGGAGAAATTCACAGGAAACTAAAA 279
Query 121 AACGTTATTATTAGCTTCATCAATCTCACAAAGTCGAAACCCGACTTTCTTCACTGCGCA 180
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 280 AATGTTATTATTAGCTTCATCAATCTCACAAAGTCGAAACCTGACTTTCTTCACTGCGCA 339
Query 181 GAGACCCTCTCTATCTCGATACTAAAGTCATGGAAAAATTGCCGAGAAGTCGAATTCCAT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GAGAACCTCTCTATCTCGATACTAAAGTCATGGAAAAATTGCCGAGAAGTCGAATTCCAT 399
Query 241 AAAGAAGTTAAAATGTATACTCTCAGTGTTATGGTAAACCAACTCTTGAGCATCAAGCCA 300
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AAAGAAGTTAAAATATTTACTCTCAGTGTTATGGTAAACCAACTCTTGAGCATCAAGCCA 459
Query 301 GAAGACCCAGCAAGACTTTATGTGTTGCAAGATTTTTTATCTTATATGAAAGGGTTTATC 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 460 GAAGACCCAGCAAGACTTTATGTATTGCAAGATTTTTTATCTTATATGAAAGGGTTTATC 519
Query 361 TCCTTACCTATACCGCTTCCAGGAACGGGTTATACAAACGCAATTAAGGCTAGGAAGAGA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TCCTTACCAATACCGCTTCCAGGAACGGGTTATACAAACGCAATTAAGGCTAGGAAGAGA 579
Query 421 TTGTCGGCGAGGGTTATGGGCATGATAAAACAaagagagcgtgaagaagaagacatgaag 480
|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 580 TTGTCGGCGAGGGTTATGGGGATGATAAAAGAAAGAGAGCGCGAAGAAGAAGACATGAAT 639
Query 481 aatgccataagagaagaagaTTTTCTAGATGCGATAATATCAAATGAAGATCTAAATTAT 540
||||| |||||||||||||||||||| ||| ||||||| || ||||||||||||||||||
Sbjct 640 AATGCAATAAGAGAAGAAGATTTTCTGGATTCGATAATTTCGAATGAAGATCTAAATTAT 699
Query 541 GAAGAGAAAGTTAGCATTGTGTTGGACATTTTGCTTGGAGGCTTTGAAACAAGTGCTACT 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 700 GAAGAGAAAGTTAGCATTGTGTTGGACATTTTGCTTGGAGGCTTTGAGACAAGTGCTACT 759
Query 601 TCTCTTTCCTTAGTCGTCTATTTTCTAGCAAAATCACCAAATCTTCTTCACAAACTCAAG 660
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 760 ACTCTTTCCTTAGTCGTCTATTTTCTAGCAAAATCTCCAAATCTTCTTCACAAACTCAAG 819
Query 661 GAAGAACATGAAGCCATTAGAGCCAAGAAAGGAGATGGGGATCTTTTGAATTGGGAAGAT 720
|||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 820 GAAGAACATGCAGCCATTAGAGCCAAGAAAGGGGATGGGGAACTTTTGAATTGGGAAGAT 879
Query 721 TATCAGAAAATGGAATTCACTCAATGTGTGATGTCTGAGGCACTACGATGTG 772
|||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 880 TATCAGAAGATGGAATTCACTCAATGTGTGATTTCTGAGGCACTACGATGTG 931
Score = 545 bits (295), Expect = 3e-154
Identities = 309/316 (98%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 826 GAATATGTGATTCCAAAGGGATGGAAGGTGTTTCCAATCTTCACAGCAGTACATCTTGAT 885
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 931 GAATATGTGATTCCAAAGGGGTGGAAGGTGTTTCCAATCTTCACAGCAGTACATCTTGAT 990
Query 886 CCATCTCTTCATGAAAATCCTTTTGAATTTAATCCCATGAGATGGACCGATAAGGCTAAG 945
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 CCCTCTCTTCATGAAAATCCTTTTGAATTTAATCCCATGAGATGGACCGATAAGGCTAAG 1050
Query 946 ATGAACAAGAAAACGACGGCGTTTGGAGGAGGAGTAAGGGTATGTCCTGGTGGTGAACTT 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 ATGAACAAGAAAACGACGGCGTTTGGAGGAGGAGTAAGGGTATGTCCTGGTGGTGAACTT 1110
Query 1006 GGCAAACTCCAAATTGCTTTCTTCCTTCATCATCTTGTCCTCTCTTATAGGTGGAAAATA 1065
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1111 GGCAAGCTCCAAATTGCTTTCTTCCTTCATCATCTTGTCCTCTCCTATAGGTGGAAAATA 1170
Query 1066 AAGTCAGATGAAATGCCAATAGCACATCCTTACGTGGAGTTTAAGAGAGGCATGCTTTTG 1125
|||||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1171 AAGTCAGATGAAATGCCAATCGCGCACCCTTACGTGGAGTTTAAGAGAGGCATGCTTTTG 1230
Query 1126 GAGATAGAGCCAACAA 1141
||||||||||||||||
Sbjct 1231 GAGATAGAGCCAACAA 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5