BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893355
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14490.1 | Symbols: anac085, NAC085 | NAC domain containing ... 1435 0.0
> AT5G14490.1 | Symbols: anac085, NAC085 | NAC domain containing
protein 85 | chr5:4670779-4672072 REVERSE LENGTH=1053
Length=1053
Score = 1435 bits (777), Expect = 0.0
Identities = 968/1057 (92%), Gaps = 25/1057 (2%)
Strand=Plus/Plus
Query 1 ATGAAAACTTTACACAGGACTTGGATTGTGGATGGTCCATGGATCGCAAGGAATGTAAAG 60
||||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1 ATGAAAACTCTACACAGGACTTGGATAGTGGATGGCCCATGGATCTCAAGGAATGTAAAG 60
Query 61 AATGCGTCTGTGTCTTCAGCTCTGCAGATTAAAGATTGTGAAGCTTATATCAACTGCCCT 120
||||||||| ||||||||||||||||||||||||| || | |||||||||||||||| |
Sbjct 61 AATGCGTCTCTGTCTTCAGCTCTGCAGATTAAAGACTGCGGAGCTTATATCAACTGCTTT 120
Query 121 AACTGCTATTACCGCGTCGACAACAGAAATTTACTGACTCCATGGCCAGGCCTTCCTAAA 180
||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 AACTGCTCTTACCGCATCGACAACAGCAATGTACTGACTCCATGGCCAGGCCTTCCTAAA 180
Query 181 GGTGTGAAATTCGAGCCAACCGATGAGGAAGTGATCGAGCATTTGGAAGCTAAGTGTGGT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 GGTGTGAAATTCGAGCCAACCGATGAGGAAGTGATTGAGCATTTGGAAGCTAAGTGTGGT 240
Query 241 ATTGATGGCTTAAAACCACATCTTCTTATCCAAGACTTTATATGTTCAGTCACTCAAGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTGATGGCTTAAAACCACATCTTCTTATCCAAGACTTTATATGTTCAGTCACTCAAGAT 300
Query 301 GTTGGTATCAACTACACTCACCCTCAAAACCTTCCAGGTGTGAATAAGGATGGAACTAGT 360
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 301 GTTGGTATCAACTACACTCACCCTCAAAACCTTCCAGGTGTGAGTAAAGATGGAACTAGT 360
Query 361 GTCTTCTTCTTTAACAAGACGGCACATGCATATCAAAATGGTCTGAGAAAGAGGAGAAGG 420
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 361 GTCTTCTTCTTTAACAAGACGGCACATGCATATCAAAATGGGCAGAGAAAGCGGAGAAGG 420
Query 421 ATCACACCAACTAGTCTCAAGGATGA-ATCGGTTCGCTGGCACAAGACTGGTCAAACCAA 479
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 421 ATCACACCAACTAGTCTCAAGGATGATA-CGGTTCGCTGGCACAAGACTGGTCAAACCAA 479
Query 480 ACCGGTGAT-CGTCAATGGAGTCCAGAAGGGATGCAAGAAGATCATGGTGCTCTATAAGA 538
||||||||| | |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 480 ACCGGTGATGC-TCAATGGAATCCAGAAGGGATGCAAGAAGATCATGGTGCTCTACAAGA 538
Query 539 GCGCGAGGAAGGGATTCAAACCTGAGAAATCTAACTGGGTTTTGCACCAGTACCACTTGG 598
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 539 GCGCGAGAAAGGGATTCAAACCCGAGAAATCTAACTGGGTTTTGCACCAGTACCATTTGG 598
Query 599 GAACAGAAGAAGGCGAGATTGGGGAATATGTTGTCTCTAAGATCACATATCAGCAACCAA 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAACTGAAGAAGGCGAGATTGGGGAATATGTTGTCTCTAAGATCACATATCAGCAACCAA 658
Query 659 AGCAATGGGAGAAAACTATGGATGAGAGTGAGAGTTCTGGGGCTCGAGGTGGCCCAACCA 718
||||| ||||||||| || |||||||||||||||||||||| |||||||||||| | ||
Sbjct 659 AGCAACAGGAGAAAACCATCGATGAGAGTGAGAGTTCTGGGGTTCGAGGTGGCCCTAGCA 718
Query 719 CACCGAAAACTACTACTCCTACACAAGCTAAACCTGTGATTTCTGTTGATGAGGATGACA 778
|||||||||||| |||| |||||||| || ||||||||||||||||||||||||||| |
Sbjct 719 CACCGAAAACTAGTACTATTACACAAGTTAGACCTGTGATTTCTGTTGATGAGGATGAAA 778
Query 779 TAGCTTATGATGAT-A--CTAAGATGGTTCATGATACATTTGCCGAGGGACTGGATAACA 835
|||||| ||||||| | |||||||||||| |||| ||| ||||||||||||||| ||||
Sbjct 779 TAGCTTTTGATGATGATTCTAAGATGGTTCTTGATTCATATGCCGAGGGACTGGAGAACA 838
Query 836 TTCAAGAAGCTTCTTATGGTTCAACATCAGACAGAGGAGCTCAAGTGGCAGGGAATTTGA 895
||||||||||||||| |||||| |||||||||| | |||| |||||| ||||||| |||
Sbjct 839 TTCAAGAAGCTTCTTCTGGTTCGACATCAGACAAAATAGCTAAAGTGGGAGGGAATGTGA 898
Query 896 GTGTGATTGAAGATAACTTGGTTTCCAAGAAAATTGAAGCTTCGTCGTCCCTTGTGGAAA 955
|||| |||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 899 GTGTTATTGAAGATAACTTAATGTCCAAGAAAATTGAAGCTTCGTCGA---TT------- 948
Query 956 AGAACCTTAATTATGGAAATGCTGAC-ATCGGATCTGGAAACTTTTCAATGACAGATTTG 1014
||| ||| ||||||||| |||| | |||||| |||||||||||| | ||||||||
Sbjct 949 ----CCT-AATCATGGAAATGTTGACTA-CGGATCAGGAAACTTTTCAGTTTCAGATTTG 1002
Query 1015 GAGAATGCAGATTTAGGGACTCTCCCTGATTT-CTTT 1050
||||||||||| |||||||||||||||||||| ||||
Sbjct 1003 GAGAATGCAGAATTAGGGACTCTCCCTGATTTACTTT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5