BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893360
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14540.1 | Symbols: | Protein of unknown function (DUF1421)... 2012 0.0
AT3G01560.1 | Symbols: | Protein of unknown function (DUF1421)... 215 1e-54
> AT5G14540.1 | Symbols: | Protein of unknown function (DUF1421)
| chr5:4687147-4689674 REVERSE LENGTH=1880
Length=1880
Score = 2012 bits (1089), Expect = 0.0
Identities = 1257/1336 (94%), Gaps = 19/1336 (1%)
Strand=Plus/Plus
Query 4 AATACGGCTCTGTTCTCGGATAAGCAGATAATGGATCTCATGAACGAC-A-A-CAATAAT 60
||| |||| ||||||||||||||||||||||||||||||||||||||| | | ||| |||
Sbjct 73 AAT-CGGCCCTGTTCTCGGATAAGCAGATAATGGATCTCATGAACGACAACAGCAACAAT 131
Query 61 TCAGAAGACGGCGATCATCATCAGAAGC-ACCGTGTCGGCGATAATGGATTGGAATCGAA 119
||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 132 TCACAAGACGGCG---ATCATCAGAA-CTACCGTGTCGGCGATAATGGATTGGAATCGAA 187
Query 120 CAAGGAAGCTATCTTCCCTAGCTATGATTTCCAACCTATCCGCCCTAATGCCTCCGTCGG 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 188 GAAGGAAGCTATCTTCCCTAGCTATGATTTCCAACCTATGCGCCCTAATGCCTCCGCCGG 247
Query 180 ATTGTCTCACCACGCTTTAGATCTCGCCGGATCTGTTAATTCCACGGCTGCTAGGGTTTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ATTGTCTCACCACGCTTTAGATCTCGCCGGATCTGTTAATTCCACGGCTGCTAGGGTTTG 307
Query 240 GGATGCGTCTGATCCTAAACCGGTTTCAGCTTCTTCCGCAAGAAGTTATGGTTCTATGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 308 GGATGCGTCTGATCCTAAACCGGTTTCAGCTTCTTCCGCAAGAAGTTATGGCTCTATGGA 367
Query 300 CTCTCTTGAACCTTCAAAGTTGTCTGCTGAGAAGGATCGAAATTCCCCTGAGTCAGCGAT 359
|||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 368 CTCTCTCGAACCTTCAAAGTTGTTTGCTGAGAAGGATCGAAATTCCCCCGAGTCAGCGAT 427
Query 360 TATATCTGCGATCGATCGGACAATGAAGGCACATGCTGATAGCTTGTTACATGTTATGGA 419
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 428 TATATCTGCGATCGATCGGACAATGAAGGCCCATGCTGATAAATTGTTACATGTTATGGA 487
Query 420 AGGTGTCAGTGCACGTCTAACGCAGCTGGAGACCAGAACCCGAAATCTCGAGAACCTGGT 479
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 488 AGGTGTCAGTGCACGTCTAACGCAGCTGGAGACCAGAACCCGAGATCTCGAGAATTTGGT 547
Query 480 TGATGATGTCAAAGTTTCTGTTGGGAACAGTCATGGAAAAACTGATGGGAAGTTGAGACA 539
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 548 TGATGATGTGAAAGTTTCTGTTGGGAACAGTCATGGAAAAACTGATGGTAAATTGAGACA 607
Query 540 GCTTGAAAACATCATGTTAGAGGTGCAAAGCGGTGTACAGTTGTTGAAGGACAAACAAGA 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 608 GCTTGAAAACATCATGTTAGAGGTGCAAAACGGTGTACAGTTGTTGAAGGACAAACAAGA 667
Query 600 AATAGTTGAAGCACAGCTTCAGCTTTCAAAGCTCCAGTTATCAAAGGTAAACCAGCAGCC 659
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 668 AATAGTTGAGGCGCAGCTTCAACTTTCAAAGCTCCAGTTATCAAAGGTAAACCAGCAGCC 727
Query 660 CGAGACACACTCTACACATGTTGAACCCACTGCTCAGCCTCCCGCATCACTGCCTCAGCC 719
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 728 GGAGACACACTCTACACATGTTGAACCCACTGCTCAGCCGCCTGCATCTCTGCCTCAGCC 787
Query 720 ACCAGCTTCTGCTGCAGCTCCCCCATCTCTTACTCAGCAGGGCCTCCCGCCACATCAATT 779
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 788 ACCAGCTTCTGCTGCAGCTCCCCCGTCTCTTACTCAGCAGGGCCTCCCACCACAACAATT 847
Query 780 TATCCAACCGACC-GCCTCACAGCACAGTCTCCCGCCACCTTCATCT-CAACTGTCTCAG 837
|||||||||| || |||||||||||| ||||| | |||||||||| | |||||| |||||
Sbjct 848 TATCCAACCG-CCTGCCTCACAGCACGGTCTCTCACCACCTTCAT-TACAACTGCCTCAG 905
Query 838 CTTCCTAGCCAGTTCTCTCCCCAGCAAGATCCTTATTTCCCTCCACCTGGTCAGTCCCAG 897
||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 906 CTTCCTAACCAGTTCTCTCCCCAACAAGAGCCTTATTTCCCTCCGTCTGGTCAGTCCCAG 965
Query 898 CCACCTCCAACAAACCAGCCTCCTTATCAACCTCCTCCTCCAACCCAGTCACTGCATCAA 957
||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 966 CCACCTCCAACAATCCAGCCTCCTTATCAACCTCCTCCACCAACCCAGTCATTGCATCAA 1025
Query 958 CCACCTTACCAGTCACCTCCTCAACAGCCACAATACCCACAACAGCCACCTCCTCAGCTC 1017
|| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1026 CCCCCTTACCAGCCACCTCCTCAACAGCCACAATACCCGCAACAGCCGCCTCCTCAGCTC 1085
Query 1018 CAACACCCGTCAGGCTACAACCCGGAGGAACCACCTTACCCTCAGCAATCTTACCCGCCA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CAACACCCGTCAGGCTACAACCCGGAGGAACCACCTTACCCTCAGCAATCTTACCCGCCA 1145
Query 1078 AACCCTCCTCGTCAACCACCTTCTCATCCACCTCCTGGTTCCGCCCCATCTCAACAGTAC 1137
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1146 AACCCTCCTCGTCAACCACCTTCTCATCCACCTCCAGGTTCTGCCCCATCTCAACAGTAC 1205
Query 1138 TACAACGGTCCTCCAACACCACCATCAATGTACGATGGATCAGGCGGCAGATCCAATTCA 1197
||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1206 TACAACGCTCCTCCAACGCCACCATCAATGTATGATGGACCAGGCGGCAGATCCAATTCA 1265
Query 1198 GGTTTCCCTTCCGGGTATTCCCCTGAACCGTACCCGTATACTGGGCCACCTTCCTCACAG 1257
||||| |||||||| ||||| |||||| | ||||||||||| ||||||||||| ||||
Sbjct 1266 GGTTTTCCTTCCGGATATTCTCCTGAATCATACCCGTATACCGGGCCACCTTC---ACAG 1322
Query 1258 TATGGAAACACCCCAATCTGTGAAACCGACACATCAGAGTGGAAGTGGATCTGGTGCCTT 1317
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1323 TATGGAAACACCCCA-TCTGTGAAACCCACACATCAGAGTGGAAGTGGATCTGGTGCCT- 1380
Query 1318 ACC-ACAGCTTCCAAT 1332
||| |||||| |||||
Sbjct 1381 ACCCACAGCTCCCAAT 1396
> AT3G01560.1 | Symbols: | Protein of unknown function (DUF1421)
| chr3:219582-221879 FORWARD LENGTH=2010
Length=2010
Score = 215 bits (116), Expect = 1e-54
Identities = 337/436 (77%), Gaps = 45/436 (10%)
Strand=Plus/Plus
Query 809 TCCC-GCCACCTTCATCTCAACT---GTCTCAGCTTCCTAGC-CAGTTCTCTCCCCAGCA 863
|||| ||||||||| || ||||| ||||||| |||| | ||||| ||| | || ||
Sbjct 1092 TCCCAGCCACCTTCCTCGCAACTACCACCTCAGCTACCTA-CGCAGTTTTCTTCTCAACA 1150
Query 864 AGATCCTTATT-TCCCTCCACCTGGTCAGTCC-CAGCCACCTCCAACAAACCAGCCTCCT 921
||| || |||| | ||||| ||| |||| ||| || ||||||||| |||||| |||||||
Sbjct 1151 AGAGCCGTATTGT-CCTCCGCCTAGTCA-TCCTCAACCACCTCCATCAAACCCGCCTCCT 1208
Query 922 TATCAACCTCCTCCTCCA-ACCCAGTCACTGCATCAACCACCTTACCAGTCACCTCCTCA 980
|| ||| ||||| || ||||| | | |||||||||| ||||||||||||| |||||
Sbjct 1209 TACCAA---GCTCCT-CAGACCCAAACGCCGCATCAACCATCTTACCAGTCACCGCCTCA 1264
Query 981 ACAGCCACAATACCCACAACAGCCACCTCCTCAGCTCCAACACCCGTCAGGCTACAA-CC 1039
|||||||| ||||| ||||||||| | || ||| || ||||||||||| ||
Sbjct 1265 GCAGCCACAGTACCCCCAACAGCCA----C-CA---CCATCA----TCAGGCTACAACCC 1312
Query 1040 CG--GAGGAACCACCTTACCCTCA-GCAATCTTACCCGCCAAACCCTCCTCGTCAACCAC 1096
|| || ||||||| || | | |||||||||||||||||||||||||||||||| |
Sbjct 1313 CGAAGAACAACCACCATA-TCAGATGCAATCTTACCCGCCAAACCCTCCTCGTCAAC-AG 1370
Query 1097 CTTCTCATCCACCTCCTGGTTCCGCCCCATCTCAACAGTACTACAACGGTCCTCCAAC-A 1155
| | | || | ||||||| |||| |||||||||| ||||||| ||||| ||| |
Sbjct 1371 C--C--A-CC---TGCTGGTTCTACCCCTTCTCAACAGTTCTACAACCCTCCTC-AACCA 1421
Query 1156 CCACCATCAATGTACGATGGATCAGGCGGCAGATCCAATTCAGGTTTCCCTTCCGGGTA- 1214
| ||||||||||||||||||| | || || ||||| ||||||||||| || ||||| ||
Sbjct 1422 CAACCATCAATGTACGATGGAGCGGGTGGTAGATCTAATTCAGGTTTTCCGTCCGGCTAC 1481
Query 1215 TTCCCCTGAACCGTAC 1230
|| | |||||| |||
Sbjct 1482 TTGTC-TGAACCTTAC 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5