BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893370
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylas... 1291 0.0
> AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase
1B | chr5:4726641-4728746 REVERSE LENGTH=1288
Length=1288
Score = 1291 bits (699), Expect = 0.0
Identities = 781/822 (95%), Gaps = 0/822 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGTCTGTAACTGCTTCCTCCAAGCTCCACCACTCTCTCGCTTATTCTTACCGGTT 60
||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 76 ATGGCCGTCTGTAACTGCTTCCTCCAAGCTCCACCACTCTCTCGCATACTCCTACCGGTT 135
Query 61 TTATCTCGCCGAGCTACTACACTCTCTGCCGGTTATGGTCGGCTCAAATCCACCGTCATG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 136 TTATCTCGCCGAGCTACTACTCTCTCTGCCGGTTATGGTCGGCTCAAATCCACGGTCACG 195
Query 121 TTCTGCTCTACTGGGAACCGGACCAGTCTTCTGATATCTCCGGTTCGCGCTGAAGTAAAG 180
||||||||||||| |||||||||||||| ||||| |||| |||| ||||| |||||||||
Sbjct 196 TTCTGCTCTACTGTGAACCGGACCAGTCCTCTGACATCTTCGGTCCGCGCAGAAGTAAAG 255
Query 181 CGCGTCTCACGTAAAGACGTTGAAGTAGCTTCAGCTTCTGATCTTCAATTTGAGACTCCT 240
|||||||| |||||||||| | |||||||||||||| ||||| ||||||||||||| |||
Sbjct 256 CGCGTCTCGCGTAAAGACGATAAAGTAGCTTCAGCTACTGATGTTCAATTTGAGACGCCT 315
Query 241 TTGAGGATTGTTGAGTATCCGGATCCTATACTACGGGCTAAGAACAAGAGGATTGGTGTT 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 316 TTGAAGATTGTTGAGTATCCGGATCCTATACTACGGGCTAAGAACAAGAGGATTGATATT 375
Query 301 TTCGACCAGAATTTGAAGAACTTGGTTGATGCTATGTTTGATGTTATGTACAAAACGGAT 360
|| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TTTGACGAGAATTTAAAGAACTTGGTTGATGCTATGTTTGATGTTATGTACAAAACGGAT 435
Query 361 GGTATTGGGCTCTCAGCACCACAAGTAGGTCTCAATGTTCAACTTATGGTGTTTAATCCA 420
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 GGCATTGGGCTCTCAGCACCACAAGTAGGTCTCAATGTTCAACTCATGGTGTTTAATCCA 495
Query 421 GCTGGGGAGCCTGGTGAAGGAGAAGAAATTGTTCTTGTAAATCCGATTATCAAGAAATAT 480
||||| |||||||| |||||| |||||||||| ||||||||||||| ||||||||||||
Sbjct 496 GCTGGAGAGCCTGGAGAAGGAAAAGAAATTGTCCTTGTAAATCCGAAAATCAAGAAATAT 555
Query 481 TCCGATAAGTTAGTACCGTTTGATGAAGGATGCCTATCCTTCCCCGGGATCTATGCTGAA 540
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 556 TCCGATAAATTAGTACCGTTTGATGAAGGATGCCTCTCCTTCCCGGGGATCTATGCTGAA 615
Query 541 GTAGTTCGACCACAATCTGTCAAGATTGATGCAAGGGACATTACTGGTGAAAGATTTTCA 600
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 616 GTTGTTCGACCACAATCTGTCAAGATTGATGCAAGGGATATTACTGGTGAAAGATTTTCA 675
Query 601 ATTAGTCTATCTCGTTTACCTGCACGAATCTTTCAGCACGAATATGACCATCTGGAGGGA 660
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 676 ATCAGTCTATCACGTTTACCTGCACGAATCTTTCAGCACGAATACGACCATCTGGAGGGA 735
Query 661 GTTCTCTTCTTTGACAGAATGACGGATCAAGTTCTTGATAGCATTCGTGAAGAGCTAGAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GTTCTCTTCTTTGACAGAATGACGGATCAAGTTCTTGATAGCATTCGTGAAGAGCTAGAG 795
Query 721 GCCCTAGAAAAGAAGTACGAAGAAAAAACTGGATTGCCAAGCCCTGAAAGAGTACAAGCA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 796 GCCCTAGAAAAGAAGTACGAAGAAAAAACTGGATTGCCAAGCCCTGAAAGAGTAGAAGCA 855
Query 781 CGACAAAAAAGGAAAGCAGGAGTTGGTTTTGGCAAACGTTGA 822
||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 CGACAAAAAAGGAAAGCAGGAGTTGGTTTTGGCAAACGTTGA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5