BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893382
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59970.1 | Symbols: | Matrixin family protein | chr1:220735... 760 0.0
> AT1G59970.1 | Symbols: | Matrixin family protein | chr1:22073534-22074876
FORWARD LENGTH=1343
Length=1343
Score = 760 bits (411), Expect = 0.0
Identities = 511/559 (91%), Gaps = 7/559 (1%)
Strand=Plus/Plus
Query 1 CACCGGAAAACTCGATTCGTCGACTCT-AGGCAAATCGTTAAACCGAGATGCGGGAATCC 59
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 373 CACCGGAAAACTCGATTCCTCGACTCTCCGGCAAATCGTTAAACCGAGATGCGGGAATCC 432
Query 60 GGATACGATCGACGGAGTTTCGGAGATGAACGGTGG-AAGAAAGCTTCGTACGAC-GAAG 117
|||| ||||||||| |||||||||||||||||||| |||| | || |||||||| | ||
Sbjct 433 GGATTTGATCGACGGGGTTTCGGAGATGAACGGTGGTAAGATA-CTCCGTACGACTG-AG 490
Query 118 CGGTACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTAC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AAATACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAACGGAAACGAGATCTGACTTAT 550
Query 178 GCGTTTGTGCAGCAGAACAATTTAACCGACAATGTTAAACGCGTGTT-TGCACGCGCCTT 236
||||||| || |||||| |||||||| ||| | |||||||||||||| | ||||||||||
Sbjct 551 GCGTTTGCGCCGCAGAATAATTTAACAGACGAGGTTAAACGCGTGTTCT-CACGCGCCTT 609
Query 237 CACGCAATGGGCGGAGGTGACTCCGTTGAATTTCACGCGCTCTGAGTCTCTCCTCGGAGC 296
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 610 CACGCGTTGGGCGGAGGTGACTCCGTTGAATTTCACGCGCTCTGAGTCTATCCTCCGTGC 669
Query 297 TGATATAGTGATCGGATTTTTCTCCGGTGAACATGGAGATGGAGAGCCGTTTGATGGAGC 356
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 670 GGATATAGTGATCGGATTTTTCTCCGGTGAACATGGTGATGGAGAGCCGTTTGATGGAGC 729
Query 357 TATGGGGACATTAGCGCACGCTTCATCTCCTCCTAAGGGGATGTTACATTTAGACGGTGA 416
|||||| ||||||||||| ||||| || ||||||| ||||||||||||||||||||||||
Sbjct 730 TATGGGAACATTAGCGCATGCTTCTTCGCCTCCTACGGGGATGTTACATTTAGACGGTGA 789
Query 417 TGAGGATTGGTTGATCTCTGACGGTGAAATTAGCCGTCGGGTTTTACCGGTGACGTCGGT 476
||||||||||||||||||| ||||||||||||| |||||| | |||||||||||| ||||
Sbjct 790 TGAGGATTGGTTGATCTCTAACGGTGAAATTAGTCGTCGGATATTACCGGTGACGACGGT 849
Query 477 GGTGGATCTTGAATCGGTGGCGGTTCATGAGATCGGACATCTTTTGGGGTTAGGTCACTC 536
||||||||||||||||||||| ||||||||||| || |||||||| ||| ||||||| ||
Sbjct 850 GGTGGATCTTGAATCGGTGGCTGTTCATGAGATTGGTCATCTTTTAGGGCTAGGTCATTC 909
Query 537 GTCAGTGGAAGATGCGATT 555
||| |||||||||||||||
Sbjct 910 GTCGGTGGAAGATGCGATT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5