BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893387
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14800.1 | Symbols: P5CR, AT-P5R, AT-P5C1, EMB2772 | pyrroli... 1363 0.0
> AT5G14800.1 | Symbols: P5CR, AT-P5R, AT-P5C1, EMB2772 | pyrroline-5-
carboxylate (P5C) reductase | chr5:4785960-4787839 REVERSE
LENGTH=1282
Length=1282
Score = 1363 bits (738), Expect = 0.0
Identities = 801/832 (96%), Gaps = 2/832 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATTCTTCCGATTCCGGCGGAGAGCTTCAAGGTAGGATTCATCGGAGCTGGTAAA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 222 ATGGAGATTCTTCCGATTCCGGCGGAGAGTTTCAAGGTAGGATTCATCGGAGCTGGTAAA 281
Query 61 ATGGCGGAGAGTATAGCTAGAGGTGTGGTTGCTTCCGGTGTGCTTCCTCCAAATCGTATC 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 282 ATGGCGGAGAGTATAGCTAGAGGTGTGGTTGCTTCCGGTGTGCTTCCTCCTAATCGTATA 341
Query 121 TCCACCGCCGTTCACTCAAATCTCAATCGCCGTGATGTTTTCGAATCCTTTGGCGTCAAT 180
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 342 TGCACCGCCGTTCACTCAAATCTCAATCGCCGTGATGTCTTCGAATCCTTTGGCGTCAAT 401
Query 181 GTCTTCTCCACTAGCGAAGAGGTTGTTAAAGAAAGCGATGTTGTCATATTCTCTGTCAAA 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 402 GTCTTCTCCACTAGCGAAGAAGTTGTTAAAGAAAGCGATGTTGTCATATTCTCTGTGAAA 461
Query 241 CCCCAAGTTGTTAAGAAGGCTGTCACGGAATTAAGGTCGAAGCTTTCAAAGAGTAAGATT 300
|| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 462 CCTCAAGTTGTTAAGAAGGCTGTCACAGAATTAAAGTCGAAGCTTTCAAAGAATAAGATT 521
Query 301 CTGGTTTCGGTTGCAGCTGGAATCAAGTTGAAAGATCTT-CAGGAATGGTCTGGTCAAGA 359
|||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 522 CTGGTTTCTGTTGCAGCTGGAATCAAGTTGAATGAT-TTACAGGAATGGTCTGGTCAAGA 580
Query 360 TCGATTCATAAGGGTGATGCCTAATACACCTGCCGCAGTTGGTGAGGCAGCTTCAGTTAT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 581 TCGATTCATAAGGGTGATGCCTAATACACCTGCCGCTGTTGGTGAGGCAGCTTCAGTTAT 640
Query 420 GAGCCTTGGCACAGGAGCTACGGAAGAGGATGGAGCTATTGTTGCTAAGTTATTTGGCGC 479
|||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 641 GAGCCTTGGCACAGGAGCAACGGAAGAGGATGGAGCAATTGTTGCTATGTTGTTTGGCGC 700
Query 480 GGTGGGGAAGATATTGAAAGCTGATGAGAAAATGTTTGATGCTGTCACTGGTCTCAGCGG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 701 GGTGGGGAAGATATTGAAAGCTGATGAGAAAATGTTTGATGCTGTCACTGGTCTCAGTGG 760
Query 540 AAGTGGACCAGCATACATATTCTTAGCAATTGAAGCTTTAGCTGATGGAGGAGTAGCTGC 599
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 761 AAGTGGACCAGCATACATATTTTTAGCAATTGAAGCTTTAGCCGATGGAGGAGTAGCTGC 820
Query 600 TGGTTTACCCCGAGAGCTCGCATTGAGTTTAGCTTCACAAACCGTTCTTGGAGCTGCAAC 659
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 821 TGGTTTACCCCGAGAGCTTGCATTGAGTTTAGCTTCACAGACCGTTCTTGGAGCTGCAAC 880
Query 660 AATGGTTAGCAAAACTGGGAAGCATCCAGGTGTGTTGAAAGATGATGTCACTTCACCTGG 719
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 881 GATGGTTAGCAAAACTGGGAAGCATCCAGGTGTGTTGAAAGATGATGTTACCTCACCTGG 940
Query 720 TGGCACTACAATAGCTGGAGTTCATGAACTAGAGAAAGGCTCTTTCCGGGCAACACTTAT 779
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CGGCACTACAATAGCCGGAGTTCATGAACTAGAGAAAGGCTCTTTCCGGGCAACACTTAT 1000
Query 780 GAACGCAGTTGTTGCTGCAGCTAAACGAAGCCGCGAGCTCTCACAGAGCTAA 831
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 GAATGCAGTTGTTGCTGCAGCTAAACGAAGCCGCGAGCTCTCACAGAGCTAA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5