BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893389
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14850.1 | Symbols: | Alg9-like mannosyltransferase family ... 2534 0.0
AT1G06370.1 | Symbols: | pseudogene, similar to putative glyco... 468 8e-131
> AT5G14850.1 | Symbols: | Alg9-like mannosyltransferase family
| chr5:4801897-4804990 REVERSE LENGTH=1862
Length=1862
Score = 2534 bits (1372), Expect = 0.0
Identities = 1554/1641 (95%), Gaps = 16/1641 (1%)
Strand=Plus/Plus
Query 1 ATGGAAATAAGGAAGCGGAAGAACGCCGGCGGCGATGGCGACGGTGGCG-CG-T--CG-G 55
||||| ||||||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 14 ATGGATATAAGGAAGCGGAAGAACGCCGGCGGCGATGGCGACGGTGGCGCCGATGGCGCG 73
Query 56 -C---TAACGGCGGGGATGATCCCGATTC-TATTAGT-GTTTTTTCAAGATCTCCGAGGA 109
| ||| | ||| ||||| || ||||| | || || || | | ||||||||||||
Sbjct 74 TCAGTTAATGTCGGAGATGAACCTGATTCGT-TTGGTGGTCGAAT-AGGATCTCCGAGGA 131
Query 110 GGATATTCTTGTTCTGCCTGGCGTTTCGTATGGTAAATGCAATGTTGATTCAGACTTATT 169
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 132 GGATATTCTTGTTCTGCTTGGCGTTTCGTGTGGTAAATGCATTGTTGATTCAGACTTATT 191
Query 170 TCAATCCGGACGAACATTGGCAATCACTTGAAGTAGCTCACCGCACCGTCTTTGGGTATG 229
||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 192 TCAATCCTGACGAACATTGGCAATCACTTGAAGTAGCTCACCGCACCATATTTGGGTATG 251
Query 230 GTTATATGACATGGGAGTGGAAGAGAGGAATAAGAAGCTATTTGCATCCAATGGTGTTCG 289
|||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct 252 GTTATATGACATGGGAGTGGAAAAGAGGAATACGAAGCTATTTGCATCCAATGTTGTTCG 311
Query 290 CATTCTTGTATAAACTTCTCCAAGTTACTGGCCTTGATACTCCCTACATAATGATCAAAG 349
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CATTCTTGTATAAACTTCTACAAGTTACTGGCCTTGATACTCCCTACATAATGATCAAAG 371
Query 350 CCCCACGTCTTATGCAATCTATATTTTCAGCTATTGGTGATCTCTATTTGTATAAACTCT 409
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CCCCACGTCTTATGCAATCCATATTTTCAGCTATTGGTGATCTCTATTTGTATAAACTCT 431
Query 410 CAGATGCTTTATATGGAGGAAATGTTGCAAGTTGGTCTCTCTTTTGTCAAATGGCAAACT 469
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 432 CTGATGCTTTATATGGAGGAAATGTTGCAACTTGGTCTCTCTTTTGTCAAATGGCAAACT 491
Query 470 GGTTCATCTTCTTCTGTTTGAACCGTACCTTTTCAAACTGCTTGGAGACTGTTCTTACAA 529
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 492 GGTTCATCTTCTTCTGTTTGAACCGTACCTTTTCAAACTGTTTGGAGACTGTTCTTACCA 551
Query 530 TCATGGGGCTGTACTACTGGCCTTGTATTAGAGATTCTTCAACAGACTATCCCGTGAATC 589
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 552 TCATGGGGCTGTACTACTGGCCTTGTATTAGAGATTCTTCAATAGACTATCCCGTGAATC 611
Query 590 GGAAGTGGGGTTTGGTTATAGGGGCCCTTGCATGTGCCATAAGGCCTACAAGTGCAATCA 649
|||||||||||||||| |||| |||||| ||||||||||||||||| || |||||| |||
Sbjct 612 GGAAGTGGGGTTTGGTCATAGCGGCCCTAGCATGTGCCATAAGGCCAACTAGTGCAGTCA 671
Query 650 TATGGTTATACGTTGGGATGCTCGAGCTATTTTTGACACCTAATAAGGTCAAGTTCATTA 709
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 672 TATGGTTATACGTTGGGATGCTCGAGCTATTTTTGACACCTAATAAGGTCAAATTCATCA 731
Query 710 TGCTAGAGGTGATCCCGATTGGATCTTTGGTCCTCGGTTTCACTTGTTTGTTGGACCGTC 769
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 732 TTCTAGAGGTGATCCCGATTGGATCTTTGGTCCTCGGTTTCACCTGTTTGTTGGACCGTC 791
Query 770 TGATGTACGGCTCGTGGGTCATTGTGCCTCTCAATTTTCTGAAGTTTAATTTCCTTTCAT 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 792 TGATGTACGGCTCGTGGGTCATTGTGCCTCTCAATTTTCTGAAGTTTAATTTCCTTTCGT 851
Query 830 CTGGTGGAGACTATTACGGAACTCACCCATGGCACTGGTACTTCACTCAGGGATTTCTTG 889
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 852 CTGGTGGAGACTATTACGGAACTCACCCATGGCACTGGTACTTCACCCAGGGATTTCTTG 911
Query 890 TCATGCTTTTCACTTTTACACCATTCTCCATTACTGGAATTTTCAATTCTAAGAACCAGA 949
|||||||||||||||| ||||||||||||||| |||||||| |||| |||||||| ||||
Sbjct 912 TCATGCTTTTCACTTTCACACCATTCTCCATTGCTGGAATTATCAAGTCTAAGAATCAGA 971
Query 950 AGCTTTCAGCTCTTATTCTATGGGTCTTAGCAATATACAGCGTACTCGGCCACAAGGAAT 1009
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 972 AGCTTTCAGCTCTTATTCTATGGGTCTTAGCAATATACAGCATACTCGGCCATAAGGAAT 1031
Query 1010 TCAGGTTTGTCCTGCCTGTGCTGCCCATAGCTTTGATATTCTCTGGGTATGCATTTGCTC 1069
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1032 TCAGGTTTGTCCTGCCTGTGCTACCCATAGCTTTGATATTCTCTGGGTATGCATTTGCTC 1091
Query 1070 AAATGGAAGTATCTGGTTCATCATCA--A-CATCAGTCACTAAAAAGAAGCAAGTCCCTC 1126
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1092 AAATGGAAGTATCTGGTTCATCATCATCATCATCAGTCACTAAAAAGAAGCAAGTCCCTC 1151
Query 1127 GACAGAACCATACCAAGTGGTCTCCTAAATTAAGACTTTCAGTCttttttttGCTTGCTA 1186
||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||
Sbjct 1152 GACAGAACCATACCAAGTGGTCTCCCAAACTAAGACTTTCAGTCTATTTTTTGCTTGCTA 1211
Query 1187 CCAATATCCCAATGGCACTATACATGAGTTTATTCCATCAGAGAGGAACCGAGGATGCGA 1246
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1212 CCAATATTCCAATGGCACTATACATGAGTTTATTCCACCAGAGAGGAACTGAGGATGCGA 1271
Query 1247 TGAACTACTTATCGGATGAAGCATACAAAGGGAGAGTAAAGAGCATTCTCTTTCTCATGC 1306
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1272 TGAATTACTTATCGGATGAAGCATACAAAGGCAGAGTAAAGAGCATTCTCTTTCTCATGC 1331
Query 1307 CCTGCCATTCTACTCCCTACTATTCCACTCTCCATCGTAACATTCCAATGCAATTTCTCG 1366
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 CGTGCCATTCTACTCCCTATTATTCCACTCTCCATCGTAACATTCCAATGCAATTTCTCG 1391
Query 1367 ACTGCACGCCAAGTGAAGAGAAGGGACAACTTGATGAGTCAGACCAGTTCTTAGTAAACC 1426
||||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 1392 ACTGCACTCCAAGTGCAGAGAAGGGAGAACTTGATGAGTCGGATCAGTTCTTAGTAAACC 1451
Query 1427 CTTTAGGTTTTGCATCAGAGTTAGCTAGCAACTGGTCAGTGCCGCCTAGTCATATTGTAT 1486
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1452 CTTTAGGTTTTGCATCAGAGTTAGCTAGAAACTGGTCAGAGCCGCCTAGTCATATTGTAT 1511
Query 1487 TGTTTGCATCAGAAGAAACAAAACTCAGAGATTTCATGATCCAACATTCCTTTAAAGAGG 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1512 TGTTTGCATCAGAAGAAACAAAACTCAGAGATTTCATGATCCAACATTCCTTTAAAGAGG 1571
Query 1547 TGAGAAGGTTTTTCCACGCGCATTTCAAAGTTGATCGAGATCTTCAATCCTCGGTGGTCG 1606
| || ||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1572 TAAGGAGGTTTTTCCACGCGCATTTCAAGGTAGATCGAGATCTTCAATCCTCAGTGGTCG 1631
Query 1607 TCTATGTTGTAAACCACACAT 1627
||||||||||||||||| |||
Sbjct 1632 TCTATGTTGTAAACCACGCAT 1652
> AT1G06370.1 | Symbols: | pseudogene, similar to putative glycolipid
alpha-mannosyltransferase, blastp match of 41% identity
and 9.6e-10 P-value to GP|13161358|dbj|BAB32949.1||AP002908
putative glycolipid alpha-mannosyltransferase {Oryza sativa
(japonica cultivar-group)} | chr1:1942843-1944934 REVERSE
LENGTH=1401
Length=1401
Score = 468 bits (253), Expect = 8e-131
Identities = 485/591 (82%), Gaps = 40/591 (7%)
Strand=Plus/Plus
Query 974 TCTTAGC--A-ATATACAGCGTACTCGGCCACAAGGAATTCAGGTTTGTCCTGCCTGTGC 1030
||||||| | ||||||||| ||||| |||| ||| ||||||||||||| |||||||||
Sbjct 729 TCTTAGCAGATATATACAGCATACTCTGCCATAAGTAATTCAGGTTTGTGCTGCCTGTGT 788
Query 1031 TGCCCATAGCTTTGATATTCTCTGGGTATGCATTTGCTCAAATGGAAGTATCTGGTTCAT 1090
| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||
Sbjct 789 TACCCATAGCTTTGATATTCTCTGGGTATACATTTGCTCAAATGGAAGCATCTGATTTAT 848
Query 1091 CATCAACATCAGTCACTAAAAAGAAGCAAGTCCCTCGACAGAACCATA-C--CAAGTGGT 1147
|||| | |||| | |||| |||||||||||||| || | ||||||| | ||||||||
Sbjct 849 CATC-A-ATCA-T---TAAAGAGAAGCAAGTCCCTGGAAATAACCATATCATCAAGTGGT 902
Query 1148 CTCCTAAATTAAGACTTTCAGTCttttttttGCTTGCTACCAATATCCCAATGGCACTAT 1207
|||||||| |||||||| ||||||| |||||| ||||||||||||||| | |||||||
Sbjct 903 CTCCTAAACTAAGACTTCCAGTCTTCATTTTGCCTGCTACCAATATCCCGA-GGCACTAC 961
Query 1208 ACATGAGTTTATTCCATCAGAGAGGAACCGAGGATGCGATGAACTACTTATCGG-ATGAA 1266
|||||||||||||| |||| ||| | ||| | | | | | ||||||||| | ||
Sbjct 962 ACATGAGTTTATTCTATCA-AGATG---CGATG-TAC-A-G----ACTTATCGGAAAAAA 1010
Query 1267 GCATACAAAGGGAGAGTAAAGAGCATTCTCTTTCTCATGCCCTGCCATTCTACTCCCTAC 1326
| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||
Sbjct 1011 GGATACAAAGGGAGAGTAAAGAGCATTCTCTCTCTCATGCCAAGCCATTCGACTCCTTAT 1070
Query 1327 TATT------CCACTCTCCATCGTAACATTCCAATGCAATTTCTCGACTGCACGCCAAGT 1380
|||| ||||||||||| ||||||||||||||| ||||||||||| ||| |||||
Sbjct 1071 TATTATTATTCCACTCTCCATAGTAACATTCCAATGCGATTTCTCGACTACACACCAAGC 1130
Query 1381 GAAGAGA--AGGGACAACTTGATGAGTCAGACCAGTTCTTAGTAAACCCTTTAGGTTTTG 1438
||||| | ||| | | |||||||||||||||| |||||| | ||| |||||| || |
Sbjct 1131 GAAGACATTAGG-AGATTTTGATGAGTCAGACCAATTCTTAATGGACCTTTTAGGATTGG 1189
Query 1439 CATCAGAGTTAGCTAGCAACTGGTCAGTGCCG-CCTAGTCATAT-TGTATTGTTTGCATC 1496
||||| |||||||||| || ||| ||| | | || |||| || | |||||||||||||
Sbjct 1190 CATCAAAGTTAGCTAGAAATTGGCCAGCAC-GACCGCGTCACATAT-TATTGTTTGCATC 1247
Query 1497 AGAAGAAACAAAACTCAGAGATTTCATGATCCAAC-ATTCCTTTAAAGAGG 1546
|||| |||||||||||||| ||| |||||||| | ||||||| ||||||
Sbjct 1248 GGAAGCAACAAAACTCAGAGGTTTTATGATCCA-CTATTCCTTCCAAGAGG 1297
Score = 148 bits (80), Expect = 1e-34
Identities = 117/134 (87%), Gaps = 5/134 (4%)
Strand=Plus/Plus
Query 733 TCTTTGGTCCTCGGTTTCACTTGTTTGTTGGACCGTCTGATGTACGGCTCGTGGGTCATT 792
|||||||||||||||||||| ||| ||||||||||| |||| | | |||| |||||||||
Sbjct 599 TCTTTGGTCCTCGGTTTCACCTGTCTGTTGGACCGTATGATATGCTGCTCATGGGTCATT 658
Query 793 GTGCCTCTCAATTTTCTGAAGTTTAATTTCCTTTCATCTGGTGGAGACTATTACGGAACT 852
||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||
Sbjct 659 GTGCCTCTCAATTTTCTGAAGCTT-----CCTCTCATCCGGTGGAGACTATTACGGAACT 713
Query 853 CACCCATGGCACTG 866
| | ||||||||||
Sbjct 714 CGCTCATGGCACTG 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80471473635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5