BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893401
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 | chr5:... 1557 0.0
> AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 | chr5:4843948-4846394
FORWARD LENGTH=1119
Length=1119
Score = 1557 bits (843), Expect = 0.0
Identities = 1000/1074 (93%), Gaps = 17/1074 (2%)
Strand=Plus/Plus
Query 8 CTCCCGCTCCCCAGGTTTACAGCCGCAAGGACAAATCTCTCGGCGTTCTTGTCGCCAATT 67
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 CTCTCGCTCCCCAGGTTTACAGCCGCAAGGACAAATCTCTCGGCGTTCTTGTCGCCAATT 91
Query 68 TCTTGGTACTGTATAATCGTCCCGATGTTGATCTGA-TTGGGCTCGATGATGCCGCCGCG 126
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 92 TCTTGACACTGTATAATCGTCCCGATGTTGATCT-ATTTGGGCTCGATGATGCCGCCGCG 150
Query 127 AAATTAGGAGTGGAACGTCGCCGTATCTATGATGTGGTGAATATATTGGAGAGTATTGGG 186
||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 151 AAATTAGGAGTTGAACGTCGGCGTATTTATGATGTGGTCAATATATTGGAGAGTATTGGG 210
Query 187 CTTGTTGCAAGAAGTGGGAAGAATCAGTATTCGTGGAAAGGTTTTGGAGCAGTTCCTCGT 246
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 211 CTTGTTGCAAGAAGTGGGAAGAATCAGTATTCGTGGAAAGGTTTTGGAGCTGTTCCTCGT 270
Query 247 GCTCTATGTGAACTCAAAGAAGAAGGAATGAGAGAGAAGTTTGGGATCGTCCCTTATGTG 306
||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||
Sbjct 271 GCTCTATCTGAACTCAAAGAAGAGGGAATGAAAGAGAAGTTTGCGATCGTCCCTTTTGTG 330
Query 307 ACCAAGTCAGAGATGGTCATTTTTGAGAAAGAAAGAGAAGAAGCTTTCATGTTAACTCCT 366
||||||||||||||||| ||| |||||||||| |||||||| ||||||||||| |||||
Sbjct 331 GCCAAGTCAGAGATGGTCGTTTATGAGAAAGAAGGAGAAGAATCTTTCATGTTATCTCCT 390
Query 367 GATGATCAAGAGTTTTCACCATCTCCCAAACTTGACAACAAGAAGGAGAGAACTCTTTGG 426
|||||||||||||| ||||||||||||| || |||||||| ||||||||||||||| |||
Sbjct 391 GATGATCAAGAGTTCTCACCATCTCCCAGACCTGACAACAGGAAGGAGAGAACTCTCTGG 450
Query 427 CTACTTGCACAGAACTTTGTGAAGCTGTTTTTATGCTCTGATGATGATCTGATAACATTT 486
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 451 CTACTTGCACAGAACTTTGTGAAGCTGTTTTTATGCTCTGATGATGATCTGGTAACATTT 510
Query 487 GATAGCGCTACAAAAGCATTGCTGATTGAGTCTCAGGATATGAATATGAGAACTAAAGTT 546
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 511 GATAGCGCTACAAAAGCATTGCTGAATGAGTCTCAGGATATGAATATGAGAAAGAAAGTT 570
Query 547 AGACGCCTTTACGACATTGCAAATGTGTTTTCCTCAATGAAGCTAATCGAGAAGACTCAT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AGACGCCTTTACGACATTGCAAATGTGTTTTCCTCAATGAAGCTAATCGAGAAGACTCAT 630
Query 607 GTCCCAGAGACTAAGAAGCCGGCATATAGGTGGTTGGGGTCCAAAACCATTTTTGAAAAC 666
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 631 GTCCCAGAGACTAAGAAGCCGGCATATAGGTGGTTGGGATCTAAAACCATATTTGAAAAC 690
Query 667 AGATTCCTT-ACTGGTTCTGCAAGCTCATTATGTGATCGTAATGTGCCTAAAAAGCGGGC 725
|||||| || | |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 691 AGATTCATTGA-TGGTTCTGCAAGCT--T-ATGTGATCGTAATGTGCCTAAAAAGCGGGC 746
Query 726 GTTTGGGACCGAACTCACAAACGTTAACGCAAAGAGAAACAAACCAGGTTGTTCT---GA 782
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 747 ATTTGGGACCGAACTCACAAACGTTAACGCAAAGAGAAACAAATCAGGTTGTTCTAAAGA 806
Query 783 AGACAGCAAGCGTTATGGAAAACAAAACACAAACATTGTTATCAAGCAAGAACTATGTGA 842
||||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 807 AGACAGCAAGCGTAATGGAAATCAAAACACAAGCATTGTTATCAAGCAAGAACAATGTGA 866
Query 843 TG-TG--AAACCGGACGTGAAGAACTTTGCCTCTGGACCATCCACTCCTGCAGGCACTTG 899
|| || ||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 867 TGATGTGAAACCGGACGTGAAGAATTTTGCCTCTGGATCATCCACTCCTGCAGGCACTTC 926
Query 900 TGAGA-TGAACAATGTAGGAAACAACATTAGGCCAAGAGGTCGACTTGGAGACATCGAAG 958
||||| | ||| || | |||||||||||||||||||||||| ||||||||| |||||||
Sbjct 927 TGAGAGT-AACGATATGGGAAACAACATTAGGCCAAGAGGTAGACTTGGAGTTATCGAAG 985
Query 959 CCCTTTCTACTCTATACCAACCA-CAGTATTGCAATCCTGCGTTAATTAGACTTTTTGAG 1017
||||||||||||| ||||||||| || ||||||||||||| |||| || | ||||||| |
Sbjct 986 CCCTTTCTACTCTTTACCAACCATCA-TATTGCAATCCTGAGTTACTTGGTCTTTTTGCG 1044
Query 1018 CATTACCACCAGACATTTAGGTCATGTCAAGAAGAGTTTGGTCGGAAGAAATGA 1071
|||||| || ||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1045 CATTACAACGAGACATTTAGGTCATATCAAGAAGAGTTTGGTCGGGAGAAATGA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5