BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg893401 Length=1071 Score E Sequences producing significant alignments: (Bits) Value AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 | chr5:... 1557 0.0 > AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 | chr5:4843948-4846394 FORWARD LENGTH=1119 Length=1119 Score = 1557 bits (843), Expect = 0.0 Identities = 1000/1074 (93%), Gaps = 17/1074 (2%) Strand=Plus/Plus Query 8 CTCCCGCTCCCCAGGTTTACAGCCGCAAGGACAAATCTCTCGGCGTTCTTGTCGCCAATT 67 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32 CTCTCGCTCCCCAGGTTTACAGCCGCAAGGACAAATCTCTCGGCGTTCTTGTCGCCAATT 91 Query 68 TCTTGGTACTGTATAATCGTCCCGATGTTGATCTGA-TTGGGCTCGATGATGCCGCCGCG 126 ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 92 TCTTGACACTGTATAATCGTCCCGATGTTGATCT-ATTTGGGCTCGATGATGCCGCCGCG 150 Query 127 AAATTAGGAGTGGAACGTCGCCGTATCTATGATGTGGTGAATATATTGGAGAGTATTGGG 186 ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct 151 AAATTAGGAGTTGAACGTCGGCGTATTTATGATGTGGTCAATATATTGGAGAGTATTGGG 210 Query 187 CTTGTTGCAAGAAGTGGGAAGAATCAGTATTCGTGGAAAGGTTTTGGAGCAGTTCCTCGT 246 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 211 CTTGTTGCAAGAAGTGGGAAGAATCAGTATTCGTGGAAAGGTTTTGGAGCTGTTCCTCGT 270 Query 247 GCTCTATGTGAACTCAAAGAAGAAGGAATGAGAGAGAAGTTTGGGATCGTCCCTTATGTG 306 ||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||| Sbjct 271 GCTCTATCTGAACTCAAAGAAGAGGGAATGAAAGAGAAGTTTGCGATCGTCCCTTTTGTG 330 Query 307 ACCAAGTCAGAGATGGTCATTTTTGAGAAAGAAAGAGAAGAAGCTTTCATGTTAACTCCT 366 ||||||||||||||||| ||| |||||||||| |||||||| ||||||||||| ||||| Sbjct 331 GCCAAGTCAGAGATGGTCGTTTATGAGAAAGAAGGAGAAGAATCTTTCATGTTATCTCCT 390 Query 367 GATGATCAAGAGTTTTCACCATCTCCCAAACTTGACAACAAGAAGGAGAGAACTCTTTGG 426 |||||||||||||| ||||||||||||| || |||||||| ||||||||||||||| ||| Sbjct 391 GATGATCAAGAGTTCTCACCATCTCCCAGACCTGACAACAGGAAGGAGAGAACTCTCTGG 450 Query 427 CTACTTGCACAGAACTTTGTGAAGCTGTTTTTATGCTCTGATGATGATCTGATAACATTT 486 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 451 CTACTTGCACAGAACTTTGTGAAGCTGTTTTTATGCTCTGATGATGATCTGGTAACATTT 510 Query 487 GATAGCGCTACAAAAGCATTGCTGATTGAGTCTCAGGATATGAATATGAGAACTAAAGTT 546 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 511 GATAGCGCTACAAAAGCATTGCTGAATGAGTCTCAGGATATGAATATGAGAAAGAAAGTT 570 Query 547 AGACGCCTTTACGACATTGCAAATGTGTTTTCCTCAATGAAGCTAATCGAGAAGACTCAT 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 AGACGCCTTTACGACATTGCAAATGTGTTTTCCTCAATGAAGCTAATCGAGAAGACTCAT 630 Query 607 GTCCCAGAGACTAAGAAGCCGGCATATAGGTGGTTGGGGTCCAAAACCATTTTTGAAAAC 666 |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 631 GTCCCAGAGACTAAGAAGCCGGCATATAGGTGGTTGGGATCTAAAACCATATTTGAAAAC 690 Query 667 AGATTCCTT-ACTGGTTCTGCAAGCTCATTATGTGATCGTAATGTGCCTAAAAAGCGGGC 725 |||||| || | |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 691 AGATTCATTGA-TGGTTCTGCAAGCT--T-ATGTGATCGTAATGTGCCTAAAAAGCGGGC 746 Query 726 GTTTGGGACCGAACTCACAAACGTTAACGCAAAGAGAAACAAACCAGGTTGTTCT---GA 782 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 747 ATTTGGGACCGAACTCACAAACGTTAACGCAAAGAGAAACAAATCAGGTTGTTCTAAAGA 806 Query 783 AGACAGCAAGCGTTATGGAAAACAAAACACAAACATTGTTATCAAGCAAGAACTATGTGA 842 ||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |||||| Sbjct 807 AGACAGCAAGCGTAATGGAAATCAAAACACAAGCATTGTTATCAAGCAAGAACAATGTGA 866 Query 843 TG-TG--AAACCGGACGTGAAGAACTTTGCCTCTGGACCATCCACTCCTGCAGGCACTTG 899 || || ||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 867 TGATGTGAAACCGGACGTGAAGAATTTTGCCTCTGGATCATCCACTCCTGCAGGCACTTC 926 Query 900 TGAGA-TGAACAATGTAGGAAACAACATTAGGCCAAGAGGTCGACTTGGAGACATCGAAG 958 ||||| | ||| || | |||||||||||||||||||||||| ||||||||| ||||||| Sbjct 927 TGAGAGT-AACGATATGGGAAACAACATTAGGCCAAGAGGTAGACTTGGAGTTATCGAAG 985 Query 959 CCCTTTCTACTCTATACCAACCA-CAGTATTGCAATCCTGCGTTAATTAGACTTTTTGAG 1017 ||||||||||||| ||||||||| || ||||||||||||| |||| || | ||||||| | Sbjct 986 CCCTTTCTACTCTTTACCAACCATCA-TATTGCAATCCTGAGTTACTTGGTCTTTTTGCG 1044 Query 1018 CATTACCACCAGACATTTAGGTCATGTCAAGAAGAGTTTGGTCGGAAGAAATGA 1071 |||||| || ||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1045 CATTACAACGAGACATTTAGGTCATATCAAGAAGAGTTTGGTCGGGAGAAATGA 1098 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52459569525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5