BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893405
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14995.1 | Symbols: | ECA1 gametogenesis related family pro... 366 5e-101
AT5G15000.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 348 2e-95
> AT5G14995.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:4853413-4853718 FORWARD LENGTH=306
Length=306
Score = 366 bits (198), Expect = 5e-101
Identities = 258/287 (90%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 17 TCAAAGTGATGTTCTTCTTTTTATCAGTGATCATGGCGTTGCTCTGTCATCATCAATCCG 76
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 20 TCAAAGTGATGTTCTTGTTTTTATGTGTGATCATGGCGTTGCTCTGTCATCATCAATCCG 79
Query 77 AAGCTCAAGC-GCG--GAAACCAAGTCCCGATGATTGCTTCTCGTCAATAAAGAAGGTTC 133
||| |||||| ||| |||||||||||| | || ||||| ||||||||||| |||||||
Sbjct 80 AAGTTCAAGCGGCGCAGAAACCAAGTCCTGTTGCTTGCTGGTCGTCAATAAACAAGGTTC 139
Query 134 AAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGATTTTAAAGGTTTGGGTAAGG 193
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 140 AAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGATTATAAAGGTTTGAGCAAGG 199
Query 194 ATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTTTCCCATCATTTTCCCCGGAA 253
||||||||| ||||||| |||||||| |||||||||||||||| || ||||| |||||
Sbjct 200 ATTGTTGCCTCGCCATCTATGGCCTCATCGACGATTGTTTTCCGATTGTTTTCAGCGGAA 259
Query 254 AACCATACATTGTAGCACCCGTTAAGGATGCATGTGTTGTTAATTAA 300
||||| |||||| || || ||||||||||||||||| ||||||||||
Sbjct 260 AACCAGACATTGCAGTACTCGTTAAGGATGCATGTGCTGTTAATTAA 306
> AT5G15000.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein | chr5:4854875-4855171 FORWARD LENGTH=297
Length=297
Score = 348 bits (188), Expect = 2e-95
Identities = 255/287 (89%), Gaps = 5/287 (2%)
Strand=Plus/Plus
Query 6 AACGAAACAGA---TCAAAGTGATGTTCTTCTTTTTATCAGTGATCATGGCGTTGCTCTG 62
||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 6 AACAAAACAGATCGTCACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTGCTTTG 65
Query 63 TCATCATCAATCCGAAGCTCAAGCGCGGAAACCAAGTCCCGATGATTGCTTCTCGTCAAT 122
|||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||
Sbjct 66 TCATCATCAATCCGAAGCTCAAGCGCCGATTCCAACTCCCGGTGATTGCTTCTCGTCAAT 125
Query 123 AAAGAAGGTTCAAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGATTTTAAAGG 182
||||||||| ||||||||| |||||||||||||||||||||||||||| || || | |
Sbjct 126 CAAGAAGGTTAAAGGTTGTGCGGATGCTGTGAAAGCTGCCACTAAAGGACATCTTCTACG 185
Query 183 TTTGGGT-AAGGATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTTTCCCATCA 241
||||| | |||||||||||||||| |||||||| ||| | ||||||||||||||| ||||
Sbjct 186 TTTGG-TCAAGGATTGTTGCCACGTCATCAATGACCTTGCCGACGATTGTTTTCCGATCA 244
Query 242 TTTTCCCCGGAAAACCATACATTGTAGCACCCGTTAAGGATGCATGT 288
|||||||||||||||| ||||||| |||| ||||||| ||||||||
Sbjct 245 TTTTCCCCGGAAAACCTTACATTGCCGCACTCGTTAAGCATGCATGT 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13873898724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5