BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893406
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18770.1 | Symbols: | P-loop containing nucleoside triphosp... 549 1e-155
> AT2G18770.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:8134639-8136560
FORWARD LENGTH=1103
Length=1103
Score = 549 bits (297), Expect = 1e-155
Identities = 544/651 (84%), Gaps = 65/651 (10%)
Strand=Plus/Plus
Query 132 GGAAGTGGCAAAATTAACAGTGCTCTTCAATCGACTCCGAGATGAATATTCGCATCGGGG 191
||||||||| || |||||| |||||| ||| ||| ||||||| || ||| |||| |||
Sbjct 313 GGAAGTGGC--AA--AACAGTTCTCTTCTATCAACTACGAGATGGATCTTCCCATCAGGG 368
Query 192 TGTTGTAACGTCAATGGAACCGAACGAAAGCACCTCTGTGCTTCACACT-AAAATC-ACT 249
|| ||||||||||||||||||||||||| |||||| ||||||||||| | |||| | ||
Sbjct 369 TGCTGTAACGTCAATGGAACCGAACGAAGGCACCTTTGTGCTTCACAATGAAAA-CAAC- 426
Query 250 ATGGTAGAGAAAGATCGTCATTTTGAGTGGATCGGAAAAACGAAACCTGTTCATCTT-TT 308
| || |||||| | | | | | ||| | |||||||||||| ||
Sbjct 427 A--CTA-AGAAAG---G--A-----A----A--AG-TAAA-G---CCTGTTCATCTTATT 462
Query 309 GGATGTTCCTGGGCACTCT---C------CTAAGCTAGAAGAATACTTGCCTCTAGCAAC 359
||||||||||| |||||| | |||||||||||||||||||||||| ||| |
Sbjct 463 -GATGTTCCTGGACACTCTCGGCTTATATCTAAGCTAGAAGAATACTTGCCTCGAGCCGC 521
Query 360 CACTCTTGTGTTTGTCGCAGATGCGA-TGGAGTTCCTCCCAAATTGT-CGGGCAGCTTCA 417
| || |||||||||| | |||||| | |||||||||||||||| | | ||||||||||||
Sbjct 522 CGCTGTTGTGTTTGTAGTAGATGC-ATTGGAGTTCCTCCCAAA-TATCCGGGCAGCTTCA 579
Query 418 GAGTACCTTTACGACATTCTGACCAATGCGGGCGTTGTTACA-AATAAGATCCCGGTTCT 476
||||||||||||||||||||||||||||| ||||| ||| | ||||||| |||||||||
Sbjct 580 GAGTACCTTTACGACATTCTGACCAATGCTAGCGTTATTA-AGAATAAGACCCCGGTTCT 638
Query 477 GCTTTGCTGTAACAAGACAGATAAAGTAACTGCATACACCAAAGATTTCATCAGCAAGCA 536
|||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct 639 GCTTTGCTGTAACAAGACAGATAAAGTAACTGCACACACCAAAGAGTTCATCCGCAAGCA 698
Query 537 GATGGAGAAACAAATAGAGAAACTTAGGGTTTCGAGGAGCGCAATATCATCAGC-GA-AT 594
|||||||||| ||||||| |||||||||||||||||||||||||||||| |||| || ||
Sbjct 699 GATGGAGAAAGAAATAGATAAACTTAGGGTTTCGAGGAGCGCAATATCAACAGCTGATAT 758
Query 595 -G--A----CTTCACTCTCGGGATTGAAGGAGAAGTGTTTTCTTTTTCGCATTGCCATAA 647
| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 759 AGCGAATGACTTCACTCTTGGGATTGAAGGAGAAGTGTTTTCCTTTTCGCATTGCCATAA 818
Query 648 CAAAGTCACGGTCGCTGAGACGTCTGGACTAACAGGAGAAACAGATCAGCTACAAGAGTT 707
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 819 CAAAGTCACGGTCGCTGAGGCGTCTGGACTAACAGGAGAAACAGATCAGGTACAAGAGTT 878
Query 708 CATCAGAGAACACGCCAGAA-CCAA-A--AT-GTGTGAGCATCTCAAAGAA 753
|||||||||||||| | || ||| | || |||| ||||||||| ||||
Sbjct 879 CATCAGAGAACACGT-A-AAGCCATGAGGATTGTGTAAGCATCTCAGAGAA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5