BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893411

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15040.1 | Symbols:  | Paired amphipathic helix (PAH2) super...   339    1e-92


> AT5G15040.1 | Symbols:  | Paired amphipathic helix (PAH2) superfamily 
protein | chr5:4869908-4870253 REVERSE LENGTH=264
Length=264

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 237/264 (90%), Gaps = 0/264 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGAATGTAGAGCATACTTTAAGGAAGTGAAAGATACGTTTCATGACCAAAGGGAA  60
            |||||||||||||| |||||||||| |||||||||||||||||||||||| ||||  |||
Sbjct  1    ATGGCTGAATGTAGGGCATACTTTATGGAAGTGAAAGATACGTTTCATGATCAAATTGAA  60

Query  61   AAATATGATATGTTCATTAGGGTTATGTCAGATTTGAGGGCACGAAGGATTCGTCATTAT  120
            ||||||||||||||||  |   || ||| |||||||| ||||||||||||| ||| | ||
Sbjct  61   AAATATGATATGTTCAAGAATATTTTGTTAGATTTGAAGGCACGAAGGATTGGTCGTCAT  120

Query  121  ACTGCGTTTGCTCGATTGAAGGAGTTGTTTAAGGGGCACAACGAATTAATTATCGGATTT  180
            ||||||||||||| |||||| |||||||| |||| |||||||||||| ||||||||||||
Sbjct  121  ACTGCGTTTGCTCAATTGAAAGAGTTGTTCAAGGAGCACAACGAATTGATTATCGGATTT  180

Query  181  AACAACTTTTTGCCACCTGGATACAAGATAACTCTTGATGATGACGTAGAAGACTCTTTT  240
            |||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  181  AACACCTTTTTGCCAACTGGATACAAGATAGCTCTTGATGATGACGTAGAAGACTCTTTT  240

Query  241  ATCTCCACCGCAAGAAACTATTGA  264
            | ||| || |||||||||||||||
Sbjct  241  AGCTCGACTGCAAGAAACTATTGA  264



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5