BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893435
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15250.2 | Symbols: FTSH6 | FTSH protease 6 | chr5:4950359-4... 1825 0.0
> AT5G15250.2 | Symbols: FTSH6 | FTSH protease 6 | chr5:4950359-4952803
REVERSE LENGTH=2214
Length=2214
Score = 1825 bits (988), Expect = 0.0
Identities = 1115/1177 (95%), Gaps = 5/1177 (0%)
Strand=Plus/Plus
Query 1 ATGAAAATGGCATCATCATCATCAGCTTTGTCTCTCCCTCTCTCCAACATCCCAACCTGT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 27 ATGAAAATGGCATCATCATCATCAGCTTTGTCTTTCCCTCTCTCCAACATCCCAACCTGT 86
Query 61 AATAAGAAGTCCCAAGAGTTTCAAAAACCGGCTCCTTTATCCAAATCCAGTCACACACAT 120
| ||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 87 AGTAAGAAGTCTCAACAATTTCAAAAACCGGCTTCTTTATCCAAATCCAGTCACACACAT 146
Query 121 AAACCTAGTCTTAAAACCCAAACTTTACACCACAAACTCACTAAGAGAAATTTACTGAGT 180
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 147 AAACCTAGTCTCAAAACCCAAATTTTACACCACAAATTCACTAAGAGAAATTTACTGAGT 206
Query 181 TT---GACTGCCTTGGGATTTACGTCATCTCTAGGAACTTTTCTTGCTCACCCCGCAAGA 237
|| |||||||||||||||||||||| | ||||||||| |||||||||||||||||| |
Sbjct 207 TTGACGACTGCCTTGGGATTTACGTCAGCGCTAGGAACTGTTCTTGCTCACCCCGCAAAA 266
Query 238 GCTGAACCAGAAGCTCCCATCGAAGCCACTTCCAATAGAATGTCGTACTCGAGATTCCTG 297
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 267 GCTGAACCAGAAGCTCCCATCGAAGCCACTTCCAATAGAATGTCGTATTCGAGATTCCTG 326
Query 298 CAGCATCTGAAAGAGAATGAAGTGAAGAAAGTTGACTTGATCGAGAACGGAACCGTTGCG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 327 CAGCATCTGAAAGAGAATGAAGTGAAGAAAGTTGACTTGATCGAGAACGGAACGGTTGCG 386
Query 358 ATCGCAGAGATCTCTATTCCAGCATTAGGAAAGATCCAGAGGGTTAGGGTTAACCTTCCC 417
|||| ||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 387 ATCGTAGAGATCTCTAATCCAGTAGTAGGAAAGATCCAGAGGGTTAGGGTTAACCTTCCC 446
Query 418 GGTTTACCGGTTGATCTGGTGAGGGAGATGAAGGAGAAGAACGTCGATTTCGCTGCTCAT 477
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GGTTTACCAGTCGATCTGGTGAGGGAGATGAAGGAGAAGAACGTCGATTTCGCTGCTCAT 506
Query 478 CCCATGGATGTGAATTGGGGAGCTTTCTTGCTCAACTTCTTGGGAAATTTAGGGTTTCCT 537
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 507 CCCATGAATGTGAACTGGGGAGCTTTCTTGCTCAACTTCTTGGGGAATTTAGGGTTTCCT 566
Query 538 TTGATCTTACTTGGCTCTCTGCTTTTAACATCTTCTTCAAGAAAAAATCCTGGTGGACCC 597
|||||||| |||| ||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 567 TTGATCTTGCTTGTCTCTCTGCTTTTAACATCTTCTTCAAGAAGAAACCCTGCTGGACCT 626
Query 598 AACTTGCCTTTTGGTCTTGGAAGAAGCAAAGCTAAGTTTCAGATGGAGCCTAACACAGGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AACTTGCCTTTTGGTCTTGGAAGAAGCAAAGCTAAGTTTCAGATGGAGCCTAACACAGGG 686
Query 658 ATAACGTTCGACGATGTAGCAGGAGTAGACGAAGCCAAGCAAGACTTCGAAGAGATCGTT 717
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 687 ATAACGTTCGAGGATGTAGCAGGAGTAGACGAAGCCAAGCAAGACTTTGAAGAGATCGTT 746
Query 718 GAATTCTTGAAAACCCCAGAGAAATTCTCAGCTTTGGGGGCTAAAATCCCAAAAGGCGTC 777
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GAATTTTTGAAAACCCCAGAGAAATTCTCAGCTTTGGGGGCTAAAATCCCAAAAGGCGTC 806
Query 778 TTGTTGACTGGACCGCCGGGAACTGGAAAAACTCTCTTGGCCAAGGCTATAGCTGGAGAA 837
|||||||| |||||||| ||||| ||||| || |||||||||||||||||||| ||||||
Sbjct 807 TTGTTGACCGGACCGCCAGGAACCGGAAAGACACTCTTGGCCAAGGCTATAGCCGGAGAA 866
Query 838 GCCGGTGTTCCGTTTTTCTCATTGTCCGGATCGGAGTTCATAGAGATGTTTGTTGGTGTA 897
||||||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 867 GCCGGTGTTCCTTTTTTTTCATTGTCTGGTTCGGAGTTCATAGAGATGTTTGTTGGTGTA 926
Query 898 GGAGCATCTAGGGTTAGAGACTTGTTCAACAAGGCAAAGGCTAATTCACCTTGTATAGTG 957
||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 927 GGAGCATCTAGAGCTAGAGACTTGTTTAACAAGGCAAAGGCTAATTCACCTTGTATAGTG 986
Query 958 TTCATTGATGAGATTGATGCTGTTGGGAGAATGAGAGGAACCGGTATAGGAGGAGGAAAC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TTCATTGATGAGATTGATGCTGTTGGGAGAATGAGAGGAACCGGTATAGGAGGAGGAAAC 1046
Query 1018 GACGAACGTGAGCAGACACTAAACCAGATTTTAACTGAAATGGACGGGTTTACGGGGAAT 1077
||||||||||||||||| ||||||||||| ||||| |||||||| |||||| ||||||||
Sbjct 1047 GACGAACGTGAGCAGACGCTAAACCAGATATTAACCGAAATGGATGGGTTTGCGGGGAAT 1106
Query 1078 ACCGGAGTGATTGTAATCGCTGCAACGAACCGGCCGGAAATTCTAGACTCTGCTTTGCTC 1137
|||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1107 ACCGGAGTAATTGTGATCGCTGCAACGAACCGGCCAGAGATTCTAGACTCTGCTTTGCTC 1166
Query 1138 CGACCAGGAAGATTCGACAGGCAGGTTTCCGTTGGTT 1174
||||||||||||||||| |||||||| | |||||||
Sbjct 1167 CGACCAGGAAGATTCGATAGGCAGGTAT--GTTGGTT 1201
Score = 1352 bits (732), Expect = 0.0
Identities = 850/907 (94%), Gaps = 8/907 (1%)
Strand=Plus/Plus
Query 1159 CAGGTTTCCGTTGGTTTACCGGATATAAGAGGAAGAGAAGAGATATTAAAAGTTCACAGC 1218
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1257 CAGGTTTCTGTTGGTTTACCGGATATAAGAGGAAGAGAGGAGATATTAAAAGTTCACAGC 1316
Query 1219 AAAAGCAAGAAACTCGACAAAGATGTGTCTTTGAGCGTGATTGCCATGAGAACTCCAGGT 1278
| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1317 AGAAGCAAGAAACTCGACAAAGATGTATCTTTGAGCGTAATTGCCATGAGAACTCCAGGT 1376
Query 1279 TTCAGTGGAGCTGACTTGGCGAATCTTATGAACGAAGCCGCGATTCTCGCCGGAAGAAGA 1338
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1377 TTTAGTGGAGCTGACTTGGCCAATCTTATGAACGAAGCAGCGATTCTCGCCGGAAGAAGA 1436
Query 1339 GGAAAAGACAAGATTACCCTTACAGAGATTGACGACTCTATCGATCGAATTGTCGCCGGA 1398
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 1437 GGAAAAGACAAGATTACCCTTACAGAGATCGACGACTCTATCGATCGGATAGTCGCCGGA 1496
Query 1399 ATGGAAGGGACGAAGATGGTCGACGGTAAAAGCAAAGCGATTGTAGCGTATCATGAAGTA 1458
||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1497 ATGGAAGGGACAAAGATGATCGACGGTAAAAGTAAAGCGATTGTAGCGTACCATGAAGTA 1556
Query 1459 GGACACGCAATTTGTGCGACTTTGACGGAGGGTCACGATCCGGTTCAGAAAGTTACGTTA 1518
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1557 GGACATGCAATTTGTGCGACTTTGACGGAGGGTCATGATCCGGTTCAGAAAGTTACGTTG 1616
Query 1519 GTTCCTAGAGGTCAAGCACGTGGTCTCACGTGGTTTTTGCCGGGAGAAGATCCGACTTTG 1578
||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1617 GTTCCTAGAGGTCAAGCACGTGGTCTCACGTGGTTCTTACCGGGAGAAGATCCGACATTG 1676
Query 1579 GTGTCTAAACAGCAATTGTTCGCTAGAATCGTCGGAGGACTCGGAGGCAGAGCCGCTGAA 1638
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1677 GTGTCTAAACAGCAATTGTTCGCTAGAATCGTCGGAGGACTCGGAGGCAGAGCCGCCGAA 1736
Query 1639 GATGTAATTTTTGGAGAACCGGAGATAACCACCGGCGCCGCCGGTGATCTCCAGCAAGGC 1698
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1737 GATGTAATTTTTGGAGAACCGGAGATAACCACCGGCGCTGCCGGTGATCTCCAGCAAGTC 1796
Query 1699 ACTGAGACAGCAAGACAGATGGTGACGATGTTCGGCATGTCCGAGATTGGTCCGTGGGCA 1758
||||||| |||||||||||||||||||||||| || ||||| || || ||||| ||||||
Sbjct 1797 ACTGAGATAGCAAGACAGATGGTGACGATGTTTGGTATGTCGGAAATCGGTCCATGGGCA 1856
Query 1759 TTAACCGACCCAGCGGTTAAGCAAAACGACGTAGTTCTACGTATGTTAGCGAGGAACTCC 1818
|||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||
Sbjct 1857 CTAACCGACCCAGCGGTTAAGCAAAACGATGTGGTTCTACGGATGCTAGCGAGGAACTCA 1916
Query 1819 ATGTCCGAAAAACTCGCGGAAGAAATTGATTCTTGCGTGAAGAAAATAATCGGTGACGCT 1878
|||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1917 ATGTCCGAGAAACTTGCGGAGGATATTGATTCTTGCGTGAAGAAAATAATCGGTGACGCT 1976
Query 1879 TACGAGATTGC-AAAGAAGCACGTGAGGAATAACAGAGAAGCCATAGACAAGCTTGTTGA 1937
|||||| |||| ||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1977 TACGAGGTTGCGAAA-AAGCACGTGAGGAATAATAGAGAAGCTATAGACAAGCTTGTTGA 2035
Query 1938 TGTTTTGTTGGAGAAAGAAACCTTAACGGGAGACGAGTTCCGAGCAATTCTGTCTGAGTA 1997
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2036 TGTTTTGTTGGAGAAAGAAACCTTAACGGGAGACGAGTTTCGAGCAATTCTGTCTGAGTA 2095
Query 1998 TACTGATCAACCATTAAATACCGATG---AT--A-GAGTTCGAATCAAAGACTTGATTAG 2051
|||||||||||| ||||||||||||| || | || |||||||||| |||||||||||
Sbjct 2096 TACTGATCAACCGTTAAATACCGATGGCGATGTAAGAATTCGAATCAATGACTTGATTAG 2155
Query 2052 TGTTTAA 2058
||| |||
Sbjct 2156 TGTCTAA 2162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102007507440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5