BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893447
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15380.1 | Symbols: DRM1 | domains rearranged methylase 1 | ... 2220 0.0
> AT5G15380.1 | Symbols: DRM1 | domains rearranged methylase 1
| chr5:4991347-4994826 FORWARD LENGTH=1875
Length=1875
Score = 2220 bits (1202), Expect = 0.0
Identities = 1583/1763 (90%), Gaps = 42/1763 (2%)
Strand=Plus/Plus
Query 32 CAACCTCGCCAAACTTTATTCAAAAGGGAATCTCTGATGAGGCGGTTGCTAGTTTTATTG 91
||||||||||||||| ||||||||| ||||||| |||||| |||| ||||| ||| | |
Sbjct 143 CAACCTCGCCAAACTCTATTCAAAATAGAATCTCCGATGAGACGGTGGCTAGCTTTGTCG 202
Query 92 AGATGGGATTTTCAAGTGAAATGATAGCTAGAGCAATTGAAGAAACCGGTGGAGCAAAT- 150
||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 203 AGATGGGATTTTCAACTCAAATGATTGCTAGAGCAATTGAAGAAACCGCTGGAGCAAATA 262
Query 151 TCGGAACCTAGGATGATTCTTGAAACTCTCTTTAACTATTCGGCAAGCACCGAAGCTAGT 210
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 263 T-GGAACCTATGATGATTCTTGAAACTCTCTTTAACTATTCGGCAAGCACTGAAGCTAGT 321
Query 211 TCTTCAAAATCTAAAGTTATCGATCATTTTATTGGGATGGGGTTTCCTGAGGAAAATGTG 270
||||| ||||| ||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 322 TCTTCGAAATCGAAAGTTATCAATCATTTTATTGCTATGGGGTTTCCTGAGGAACATGTG 381
Query 271 ATAAAAGCTATACAAGAATACGGAGATGAAAATAT-TGATGAGATCACGAATGCACTTCT 329
||||||||||| |||||| ||||||||||| || | || ||||||||||||||||||||
Sbjct 382 ATAAAAGCTATGCAAGAACACGGAGATGAAGATGTGGGA-GAGATCACGAATGCACTTCT 440
Query 330 AACTTATGCGGAGGTTGACAGACTAGGTGAAACAAAGGACGTGAACATCAACACT-A--C 386
|||||||||||||||||||| | || ||||| || ||||| |||||||||||| | |
Sbjct 441 AACTTATGCGGAGGTTGACAAATTACGTGAATCAGAGGACATGAACATCAACATTAATGA 500
Query 387 TGATGATGATGATAATCTCTATTCCTTATCATCAGATGATGACGAGGATGAACTAAACAA 446
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 501 TGATGATGATGATAATCTCTATTCCTTGTCATCAGATGATGAAGAGGATGAACTAAACAA 560
Query 447 CTCCTCCCAA-GAAGATAGTATCTTGCAAGCGTTGATCAAAATGGACTATTCGAGGGAAG 505
||||| |||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 561 CTCCT-CCAATGAAGATAGAATCTTGCAAGCGTTGATCAAAATGGGCTATTTGAGGGAAG 619
Query 506 AGGCTGCTATAGCTATAGAGAGATGTGGAGAAGATGCAAGTGTGGAAGAGGTGGTAGACT 565
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 620 ATGCTGCTATAGCTATAGAGAGATGTGGAGAAGATGCAAGTATGGAAGAGGTGGTAGACT 679
Query 566 TCATTTGTGCTGCTCAGATGGCACGGCAGTTCGATGAGTTTTTTGCAGAACCTGATAAAA 625
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| || |
Sbjct 680 TCATTTGTGCAGCTCAGATGGCACGGCAGTTCGATGAGATTTATGCAGAACCTGACAAGA 739
Query 626 AAGAGCCTATGAATAACAGCAAAAAGAGGCGAACATACAATGAGCCACCGAGAAGAGAGA 685
|||||| ||||||||||| |||||| ||||||||||||| |||| |||| | |
Sbjct 740 AAGAGCTTATGAATAACAACAAAAAAAGGCGAACATACACTGAGACACC--------A-A 790
Query 686 GAAAGCCGAACACTGCCATGGCCAATGACCAGCTCATCTATCTACCGAAGGAGATGATTG 745
|||||||||||| | | ||||||||||||| |||||| || ||||||||||
Sbjct 791 GAAAGCCGAACA----C---G-----GACCAGCTCATCTCTCTACCAAAAGAGATGATTG 838
Query 746 GGTTTGGTGTCCCTAATAGA-CCTGGACTTATGATGAACAGAGCAGTCCCAGTTCCGGAT 804
||||||||||||||||| | || |||||||||||| ||||| |||||||| ||||||||
Sbjct 839 GGTTTGGTGTCCCTAAT-CATCCCGGACTTATGATGCACAGACCAGTCCCAATTCCGGAT 897
Query 805 ATTGCTTGTGGCCCGCCCTTCTTCTACTACGAGAACGTTGCCATGGCACCAAAAGGTGTT 864
|||||| |||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||
Sbjct 898 ATTGCTCGTGGCCCGCCCTTCTTTTACTATGAGAACGTTGCTATGACACCAAAAGGTGTT 957
Query 865 TGGGCCACGATCTCCAGCCACTTGTACGACATCGTTCCTGAATTCGTGGATTCAAAGCAT 924
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGGGCCAAGATCTCCAGCCACTTGTACGACATCGTTCCTGAATTCGTGGATTCAAAGCAT 1017
Query 925 TTTTGTGCCGCTGCGAGAAAGAGAGGATATATTCACAACT-TGCCAATCCAGAATAGGTT 983
|||||||||||||| |||||||| || ||||| || || | |||||||||||||||||||
Sbjct 1018 TTTTGTGCCGCTGCAAGAAAGAGGGGGTATATCCATAA-TCTGCCAATCCAGAATAGGTT 1076
Query 984 CCAGATTCAGCCTCCACCGCACAATACAATCCAAGAAGCCTTACCCTTAACCAAGCGATG 1043
|||||||| ||||||| |||||||| |||||||||||||| || || |||||||||||
Sbjct 1077 TCAGATTCAACCTCCACAACACAATACCATCCAAGAAGCCTTTCCATTGACCAAGCGATG 1136
Query 1044 GTGGCCTAGTTGGGATGGGAGAACGAAGTTGAATTGTCTGTTGACTTGTATTGCCAGTGC 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1137 GTGGCCTAGTTGGGATGGGAGAACGAAGTTGAATTGTCTGTTGACTTGTATTGCCAGTTC 1196
Query 1104 TAAG-CTCACA-AACAGAATACGCGAGGCTCTTGAGAAATATGATGGAGAGCCACCTCAA 1161
| || |||||| || | ||||||||| |||||||||| ||||||||||||| |||||| |
Sbjct 1197 T-AGACTCACAGAA-AAAATACGCGAAGCTCTTGAGAGATATGATGGAGAGACACCTCTA 1254
Query 1162 CATGTGCAGAAACAAGTCATGTACCAATGCAAAAAATGGAATTTGGTTTGGGTAGGTAAG 1221
|||| || ||| || ||||| |||||||||| |||||||||||||||||||||||
Sbjct 1255 GATGTTCAAAAATGGGTTATGTATGAATGCAAAAAGTGGAATTTGGTTTGGGTAGGTAAA 1314
Query 1222 AACAAGCTTGCCCCGCTGGAGC-CAGATGAGATGGAGAAGCTTCTAGGCTTCCCGAGAGA 1280
|||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||
Sbjct 1315 AACAAGCTTGCCCCGCTGGA-CGCAGATGAGATGGAAAAGCTTTTAGGCTTCCCGAGAGA 1373
Query 1281 CCATACTCGAGGTGGAGGAATCAGCAGAACTGACCGCTACAAGTCTTTAGGCAACTCGTT 1340
||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 1374 TCATACTCGAGGAGGAGGTATCAGCACAACTGATCGCTACAAGTCTTTAGGGAACTCGTT 1433
Query 1341 TCAGGTTGATACTGTTGCGTATCACTTGTCTGTCCTTAAGCCTTTGTTTCCGAATGGAAT 1400
|||||||||||| ||||| |||||||||||||| ||||||||| |||| || ||||||||
Sbjct 1434 TCAGGTTGATACAGTTGCTTATCACTTGTCTGTGCTTAAGCCTCTGTTCCCAAATGGAAT 1493
Query 1401 AAAGGTTCTGTCACTCTTCACGGGGATTGGTGGTGGAGAAGTTGCACTCCATCGTCTCCA 1460
|| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1494 CAACGTCCTGTCACTCTTCACGGGCATTGGTGGTGGAGAAGTTGCACTCCATCGACTCCA 1553
Query 1461 AATTCGGCTGAATGTAGTTGTGTCTGTTGAGATTTCAGAAGCGAACAGAAACATATTGAG 1520
|||| | ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1554 AATTAAGATGAATGTTGTTGTGTCTGTGGAGATTTCAGATGCGAACAGAAACATATTGAG 1613
Query 1521 AAGCTTTTGGGAGCAGACGAATCAAAAGGGTATCCTGAGAGAGTTTAAAGATGTTGAAAA 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1614 AAGCTTTTGGGAGCAGACGAATCAAAAGGGTATCCTGAGAGAGTTTAAAGATGTTCAAAA 1673
Query 1581 GCTAGACGACAATACGATTGAGCAGCTTATGGACGAGTACGGAGGATTCGATTTGGTCAT 1640
||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 1674 GCTAGACGACAATACGATTGAGCGGCTTATGGACGAGTACGGAGGATTCGACTTAGTCAT 1733
Query 1641 TGGAGGAAGTCCGTGTAACAATCTCGCCGGAGGGAATCGCCAT-AGTCGGGTCGGTCTTG 1699
||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||
Sbjct 1734 AGGAGGAAGTCCGTGTAACAATCTTGCCGGAGGCAATCGCCATCA-TCGGGTCGGTCTTG 1792
Query 1700 AAGGAGAGCACTCCTCACTCTTCTTTGATTACTGTCGGATTCTCGAGACAGTTGGTCGCA 1759
|||||||||||| ||||||||||| || || ||| ||||||||||| | ||| ||||||
Sbjct 1793 GAGGAGAGCACTCGTCACTCTTCTTCGACTATTGTAGGATTCTCGAGGCTGTTCGTCGCA 1852
Query 1760 AAGCAAGACAAATGAGGAGATGA 1782
||||| |||| ||||||||||||
Sbjct 1853 AAGCACGACATATGAGGAGATGA 1875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5