BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893466

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15560.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   734    0.0  


> AT5G15560.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G02125.1); 
Has 229 Blast hits to 215 proteins in 51 species: Archae - 
0; Bacteria - 10; Metazoa - 48; Fungi - 14; Plants - 19; Viruses 
- 7; Other Eukaryotes - 131 (source: NCBI BLink). | chr5:5064051-5064889 
FORWARD LENGTH=720
Length=720

 Score =  734 bits (397),  Expect = 0.0
 Identities = 494/539 (92%), Gaps = 13/539 (2%)
 Strand=Plus/Plus

Query  76   AAGA-ATGATAATGAGAGCAACATAGAAGAGA-TGATCAAACTCAATTGCAAAGAACAAG  133
            |||| | ||| |||||||||| |||||||| | | |||||| ||||| ||||||||||||
Sbjct  168  AAGAGAGGATGATGAGAGCAATATAGAAGA-ATTTATCAAATTCAATAGCAAAGAACAAG  226

Query  134  ATATTTCAAATGTAATAAAGAGTAAACAAGAAGAAAAAGCAACAGTTGAAGATGATGACG  193
            ||||||||||||   |||  ||||||||| |||| || ||||||   |||||||||||||
Sbjct  227  ATATTTCAAATG---TAACCAGTAAACAAAAAGACAAGGCAACAACAGAAGATGATGACG  283

Query  194  ATGATGTGAAAGAGATTATACAAGACGATATAAGCATTTGTTGTCGTTCAGAGGCGAGCA  253
            |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  ATGATGTGAAGGAGATAATACAAGACGATATAAGCATTTGTTGTCGTTCAGAGGCGAGCA  343

Query  254  ACAACAGCATCTCTTCTTTCACATTCCCCATACTGCATAACGAAGAAGATGGAAGTGTCA  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  344  ACAACAGCATCTCTTCTTTCACATTCCCCATACTGCATAACGAAGAAGATGAAAGTGTCA  403

Query  314  CAATGCCGTCGTTGGAAACCATATGGAACGTTTACGATAACCAACTATTTTCAGAGTTGT  373
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  404  CAATGCCGTCGTTAGAAACCATATGGAACGTTTACGATAACCAGCTATTTTCAGAGTTGT  463

Query  374  CTCAGCCGCCA-AAGCAACCACAAGGTCCACAACCACAACAACAATTTTATTTCATCCCA  432
            ||||||||| | ||||| || || |  |||| |||| |||||||||||||||||||||||
Sbjct  464  CTCAGCCGC-AGAAGCAGCCGCA-G--CCACGACCAGAACAACAATTTTATTTCATCCCA  519

Query  433  TCAACTCAGACTCTACCTCAGCTACCGCCACAAAAGAAGTCGTTGTTGTCAAAGCAAACG  492
             ||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct  520  GCAACTCACACTCTAGCTCAGCTACCACCACAAAGGAAGTCGTTGTTGTCAAAGCAAACG  579

Query  493  TCTGAAACGCAATCCCAAAAAGTTTTTATAAACCGCTGGTTCTCTTGCTTTAATTTTATT  552
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  580  TCTGAAACGCAATCCCAAAAGGTTTTTATAAACCGCTGGTTCTCTTGCTTTAATTTTATC  639

Query  553  ATCCATTTCGACGTGATTGATTCAAGAAGTAGAAGAAGGaa-aaaaa-GGAAAGACTAG  609
            |||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||
Sbjct  640  ATCCATTTCGACGTGATTGAATCAAGAAATAGAAGAAGGAAGAAAAAAGGAAAGACTAG  698



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5