BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893513
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16030.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1343 0.0
> AT5G16030.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1);
Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:5238178-5240748 FORWARD LENGTH=1278
Length=1278
Score = 1343 bits (727), Expect = 0.0
Identities = 953/1054 (90%), Gaps = 47/1054 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTTGCGAGGAGATGAGCCTGAGTTTATGAACCTAAGAGAATGGGATCGAAGAGCT 60
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 65 ATGGCTTTGCGAGGAGATGAGCATGAGTTTATGAACTTAAGAGAATGGGATCGAAGAGCT 124
Query 61 CGTTTAATCCGCGAAAACCCGACTTCAAGAAGATTCTCTGCTTCATACATTGGAAGCTTC 120
|| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 125 CGATTAATCCGCGAAAACCCGAGTTCAAGAAGATTCTCAGCTTCATACATTGGAAGCTTC 184
Query 121 CGAGAAGATCATCACAAGTCTTCTTTTAG---AACAAACTTCAACAATATCTCTAGTACT 177
||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 185 CGAGAAGATCACCACAAGTCTTCTTTTAGAACAACAAACTTCAACAACATCTCTAGTACT 244
Query 178 GCCTCTTCTCCTGGCTACACTCTCAAAGAAGAGATTGACCCATCAACATATTCCTTCACC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GCCTCTTCTCCTGGCTACACTCTCAAAGAAGAGATTGACCCATCAACATATTCCTTCACC 304
Query 238 AATGCACTTAAAGCATTACAAGCAAAGACAATGTACAATAACAGAGAATGGTTAGCACAA 297
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 305 AATGCACTCAAAGCATTACAAGCAAAGACAATGTACAATAACAGGGAATGGTTAGCACAA 364
Query 298 GAAGGGTTTGCATTGAATTCGAAGTGGAACGAAGCAGAGAAATATATCTGCAATCCATTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAAGGGTTTGCATTGAATTCGAAGTGGAACGAAGCAGAGAAATATATCTGCAATCCATTG 424
Query 358 TCTGGAGAAGTTCCAATGGAGTGTTTGTCTGCTAAAACATTAAGTGCAAGATCCTTCAGA 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TCTGGAGAAGTACCAATGGAGTGTTTGTCTGCTAAAACATTAAGTGCAAGATCCTTCAGA 484
Query 418 AACTTATCCACCATGTCTGCTCCTCTTCAACACTTCCCTAATCCCAATCCATTGATGAAT 477
|||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||
Sbjct 485 AACTTATCAACCATGTCTGCTCCTCTTCA-C--TTCCCTAGTCCCAATCCATTGATGAAT 541
Query 478 AATATTGGTCAAAACAAACCAAATAATAATCCTAACGTTAGAGTTATTCACGAGGATCTT 537
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 542 AATATTGCTCAAAACAAACCAAATAATAATCCTAACGTTAGAGTCATTCACGAGGATCTT 601
Query 538 TATGCTCCTGATCCTGTACTTGTTGCTCGAGCAGAAA-A-GAAAGT-TGTG----G-GGA 589
|||||||||||||||| |||| |||||| || | || | | | ||| | |||
Sbjct 602 TATGCTCCTGATCCTGAACTTCTTGCTCTAGTA-AATTATGGGGGGGTGTTTTTAGCGGA 660
Query 590 TGAAGCGAGATGTGGGCAT-A--C-AGA-------ATAC-GA---CGTCG--G-TGGATC 631
||| || |||||| || | | ||| |||| || || || | ||||||
Sbjct 661 A-AAGAAAGTTGTGGGGATGAAGCGAGATGTGGGCATACAGAGTACGACGTCGGTGGATC 719
Query 632 TTAGCTCCGGTAGCCCTAGTCCGGCAAAGACGCCTCCGATTACGGAAAGGTCGTTGAAAC 691
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 720 TTAGCTCCGGTAGCCCTAGTCCGGCAAAAACGCCTCCGATTATGGAAAGGTCGTTAAAAC 779
Query 692 GACACGTGGAAGCTGATGATTCGCCACTGGATTTCAATCTCAAACTGAAAGGTCAACAAG 751
||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||
Sbjct 780 GACACGTGGAAGCTGATGATTGGCCAGTGGATATCAATCTCAAAGTGAAAGGTCAACAAC 839
Query 752 AGGATGTGAAGTTGGgaa-agaaagaaaaagaagaagagaagcaagatatgagcaacgag 810
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGGATGTGAAGTTGG-AAGAGAAAGAAAAAGAAGAAGAGAAGCAAGATATGAGCAACGAA 898
Query 811 gaagaagaaggagaagaagaagtaga-a-g-aaga-a-gaga-aacaagat-attagtga 863
||||| |||| ||||||||||| ||| | | |||| | ||| || ||||| || | ||
Sbjct 899 GAAGATGAAGAAGAAGAAGAAGAAGAGAAGCAAGATATGAGTGAAGAAGATGATAAA-GA 957
Query 864 agaagatgaagaaggggaacaacaagaagagaagaccaagaagaagaagagaggaaCTGG 923
|||||| || ||| || || |||||||||||||||||||||||||||||||| ||||
Sbjct 958 AGAAGAAGACGAAC---AAGAAGAAGAAGAGAAGACCAAGAAGAAGAAGAGAGGACCTGG 1014
Query 924 ATGTTTCTCATGGGTGAGAACAAGACAAAGACAAGCAAGAAAATCAAAGTACATCTTCCC 983
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1015 ATGTTTCTCATGGGTGAGATCAAGACAAAGACAAGCAAGAAAATCAAAGTATATCTTCCC 1074
Query 984 TATTTGTGTTCCTCATCTTGTCAAAGGTTGTTGA 1017
||||||||||||||||||||||||||||||||||
Sbjct 1075 TATTTGTGTTCCTCATCTTGTCAAAGGTTGTTGA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5