BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg893515
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory ... 1321 0.0
AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory facto... 793 0.0
AT1G26480.1 | Symbols: GRF12, GF14 IOTA | general regulatory fa... 143 3e-33
> AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory
factor 5 | chr5:5243745-5245820 REVERSE LENGTH=1162
Length=1162
Score = 1321 bits (715), Expect = 0.0
Identities = 768/794 (97%), Gaps = 2/794 (0%)
Strand=Plus/Plus
Query 3 GTCCCGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAGGCTGAGCGTTACGAGGA 62
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 107 GTCCCGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAAGCTGAGCGTTACGAGGA 166
Query 63 AATGGTTGAGTTCATGGAGAAAGTTGCTAAGACCGTGGACACTGAGGAACTTACTGTTGA 122
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 167 AATGGTTGAGTTCATGGAGAAAGTTGCAAAGACCGTGGAGACCGAGGAACTTACTGTTGA 226
Query 123 AGAGAGGAATCTCTTGTCTGTTGCGTATAAGAACGTGATTGGTGCTAGGAGGGCTTCTTG 182
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 227 AGAGAGGAATCTCTTGTCTGTTGCTTACAAGAACGTGATTGGTGCTAGGAGAGCTTCTTG 286
Query 183 GAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAGCAGGGGTAACAGTGATCACGTTTC 242
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 287 GAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAGCAGGGGCAACAGTGATCATGTTTC 346
Query 243 GATTATCAAGGATTACAGAGGCAAGATTGAAACTGAGCTCAGCAAGATTTGCGATGGCAT 302
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 347 GATTATCAAGGATTACAGAGGCAAGATTGAAACTGAGCTCAGCAAGATTTGTGATGGCAT 406
Query 303 TTTGAACCTTCTCGAGGCTCATCTCATTCCTGCTGCTTCCTTGGCTGAGTCCAAAGTTTT 362
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 407 TTTGAACCTTCTTGAGGCTCATCTCATTCCTGCTGCTTCTTTGGCTGAGTCCAAAGTTTT 466
Query 363 TTACCTCAAGATGAAGGGAGATTACCATCGGTACCTTGCTGAATTCAAGACTGGTGCTGA 422
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 467 TTACCTGAAGATGAAGGGAGATTATCATCGGTACCTTGCTGAATTCAAGACTGGTGCTGA 526
Query 423 GAGGAAAGAAGCTGCTGAGAGTACTCTTGTGGCCTACAAGTCTGCTCAGGATATTGCTCT 482
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 527 GAGGAAAGAAGCTGCTGAGAGCACTCTTGTTGCCTACAAGTCTGCTCAGGATATTGCTCT 586
Query 483 TGCTGACT-TGGCTCCCACTCACCCGATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTT 541
|||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 587 TGCTGA-TCTGGCTCCCACTCACCCAATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTT 645
Query 542 TCTACTATGAGATTCTCAACTCATCTGATCGTGCATGTAGTCTCGCAAAGCAGGCTTTTG 601
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 646 TCTACTATGAGATTCTCAACTCATCTGATCGTGCGTGTAGTCTCGCAAAGCAGGCTTTTG 705
Query 602 ATGAGGCAATCTCTGAGCTAGATACATTGGGAGAGGAATCATACAAGGACAGTACATTGA 661
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 706 ATGAGGCAATCTCGGAGCTAGACACATTGGGAGAGGAATCATACAAGGACAGTACATTGA 765
Query 662 TCATGCAGCTTCTCCGTGATAATCTCACCCTCTGGACTTCTGACCTCAATGACGAAACTG 721
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 766 TCATGCAGCTTCTCCGTGACAATCTCACCCTCTGGACTTCTGACCTCAATGACGAAGCTG 825
Query 722 GTGATGATATCAAGGAAGCCCCGAAAGAGGTGCAGAAAGATGAGGAACAAGCCCAACCAC 781
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 826 GTGATGATATCAAGGAAGCCCCGAAAGAGGTGCAGAAAGTTGATGAACAAGCCCAACCAC 885
Query 782 CACCTTCGCAGTGA 795
||||||||||||||
Sbjct 886 CACCTTCGCAGTGA 899
> AT3G02520.1 | Symbols: GRF7, GF14 NU | general regulatory factor
7 | chr3:526437-528313 REVERSE LENGTH=1245
Length=1245
Score = 793 bits (429), Expect = 0.0
Identities = 636/737 (86%), Gaps = 9/737 (1%)
Strand=Plus/Plus
Query 7 CGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAGGCTGAGCGTTACGAGGAAATG 66
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 97 CGGGAAGAGAATGTGTACTTAGCCAAGTTAGCTGAGCAAGCTGAACGTTATGAGGAAATG 156
Query 67 GTTGAGTTCATGGAGAAAGTTGCTAAGACCGTGGACACTGAGGAACTTACTGTTGAAGAG 126
||||||||||||||||||||||| ||||| || ||||| || || |||||||| ||||||
Sbjct 157 GTTGAGTTCATGGAGAAAGTTGCAAAGACTGTTGACACCGATGAGCTTACTGTCGAAGAG 216
Query 127 AGGAATCTCTTGTCTGTTGCGTATAAGAACGTGATTGGTGCTAGGAGGGCTTCTTGGAGG 186
|| || |||||||||||||| || |||||||| |||||||||||||| ||||| ||||||
Sbjct 217 AGAAACCTCTTGTCTGTTGCTTACAAGAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGG 276
Query 187 ATTATCTCTTCCATTGAGCAGAAGGAAGATAGCAGGGGTAAC-AGTGATCACGTTTCGAT 245
|| || ||||||||||| ||||||||||| ||||| || ||| | |||||| ||||| ||
Sbjct 277 ATCATATCTTCCATTGAACAGAAGGAAGAAAGCAGAGGAAACGA-TGATCATGTTTCCAT 335
Query 246 TATCAAGGATTACAGAGGCAAGATTGAAACTGAGCTCAGCAAGATTTGCGATGGCATTTT 305
||||||||| |||||||| ||||| |||||||| |||||||| || || ||||| || |
Sbjct 336 TATCAAGGACTACAGAGGAAAGATCGAAACTGAACTCAGCAAAATCTGTGATGGAATACT 395
Query 306 GAACCTTCTCGAGGCTCATCTCATTCCTGCTGCTTCCTTGGCTGAGTCCAAAGTTTTTTA 365
|| ||||| || |||| || |||| |||| || ||||| ||||||||||| |||||
Sbjct 396 CAATCTTCTGGATTCTCACCTTGTTCCCACTGCATCTTTGGCCGAGTCCAAAGTCTTTTA 455
Query 366 CCTCAAGATGAAGGGAGATTACCATC-GGTACCTTGCTGAATTCAAGACTGGTGCTGAGA 424
|||||| ||||| ||||||||||| | ||||||||||||| || |||||||| |||||||
Sbjct 456 CCTCAAAATGAAAGGAGATTACCA-CAGGTACCTTGCTGAGTTTAAGACTGGAGCTGAGA 514
Query 425 GGAAAGAAGCTGCTGAGAGTACTCTTGTGGCCTACAAGTCTGCTCAGGATATTGCTCTTG 484
||||||||||||||||||| ||||| || || |||||||| |||||||||||||| ||||
Sbjct 515 GGAAAGAAGCTGCTGAGAGCACTCTGGTTGCTTACAAGTCAGCTCAGGATATTGCACTTG 574
Query 485 CTGACTTGGCTCCCACTCACCCGATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTTTCT 544
|||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 575 CTGATTTAGCTCCTACTCATCCGATTAGACTGGGACTTGCTCTTAACTTCTCTGTCTTCT 634
Query 545 ACTATGAGATTCTCAACTCATCTGATCGTGCATGTAGTCTCGCAAAGCAGGCTTTTGATG 604
|||| ||||||||||||||| |||||||||| || ||||||||||| |||||||||||||
Sbjct 635 ACTACGAGATTCTCAACTCACCTGATCGTGCCTGCAGTCTCGCAAAACAGGCTTTTGATG 694
Query 605 AGGCAATCTCTGAGCTAGATACATTGGGAGAGGAATCATACAAGGACAGTACATTGATCA 664
|||| || |||||||| |||||||| ||||| ||||||||||| |||||||| ||||| |
Sbjct 695 AGGCCATTTCTGAGCTGGATACATTAGGAGAAGAATCATACAAAGACAGTACGTTGATAA 754
Query 665 TGCAGCTTCTCCGTGATAATCTCACCCTCTGGA-CTTCTGACCTCAATGACGAAACTGG- 722
|||| ||||||||||| ||||| ||||| |||| || ||||| ||||||| || | ||
Sbjct 755 TGCAACTTCTCCGTGACAATCTGACCCTTTGGAACT-CTGACATCAATGATGAGGCGGGC 813
Query 723 --TGATGATATCAAGGA 737
|||||| ||||||||
Sbjct 814 GGTGATGAGATCAAGGA 830
> AT1G26480.1 | Symbols: GRF12, GF14 IOTA | general regulatory
factor 12 | chr1:9156329-9157950 REVERSE LENGTH=1156
Length=1156
Score = 143 bits (77), Expect = 3e-33
Identities = 449/620 (72%), Gaps = 60/620 (10%)
Strand=Plus/Plus
Query 115 ACTGTTGAAGAGAGGAATCTCTTGTCTGTTGCG-TATAAGAACGTGATTGGTGCTAGGAG 173
||||| |||||||||||||| ||||| |||| | || ||||||||||| || || || ||
Sbjct 235 ACTGTGGAAGAGAGGAATCTGTTGTCGGTTG-GTTACAAGAACGTGATCGGAGCAAGAAG 293
Query 174 GGCTTCTTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAG-C-AGGGGTAACAGT 231
||||| |||||||| || || ||||| |||||||| |||| || | | || || |
Sbjct 294 AGCTTCGTGGAGGATAATGTCGTCCATCGAGCAGAAAGAAG--AGTCTAAAGG---CAAT 348
Query 232 G-ATC--ACGTTTCGA-TTATCAAGGATTA-CAGAGGCAAGATTGAA-ACTGAGCTCAGC 285
| ||| ||| | | ||||||| ||| | | ||| | ||| | ||||||| ||
Sbjct 349 GAATCAAACG-TGAAACAAATCAAGGGTTATC-GCCAAAAGGTAGAAGA-TGAGCTC-GC 404
Query 286 -AAGATTTGCGATGGCATTTTGAACCTTC-TCGAGGC-TCATCTCATTCCTGC-TGCTTC 341
|| |||||| | | |||| | ||| || | || | |||||||| ||| | ||| |
Sbjct 405 TAACATTTGCCAAGACATTCT-CACCATCATTGA-TCAGCATCTCATCCCT-CACGCTAC 461
Query 342 CT-TGGCTG-AGTCCAAAGTTTTTTACCT-CAAGATGAAGGGAGATTACCATCGGTACCT 398
|| || | || | | || || || || ||||||||| |||||||| | || || ||
Sbjct 462 CTCAGG-GGAAG-CTACCGTCTTCTA-CTACAAGATGAAAGGAGATTATTACCGTTA-CT 517
Query 399 T-GCTGAATTCAAGACTGGTGC-TGAGAGGAAAGAAGCTGCTG-AGAGTACTCT-TGTGG 454
| ||||| || ||||| | || |||||||| |||||||||| | ||| |||| ||
Sbjct 518 TGGCTGAGTTTAAGAC-CGAGCAAGAGAGGAAGGAAGCTGCTGAACAGT-CTCTCAAAGG 575
Query 455 CCTACAAGTCTGCTCAGGATATTGCT-CTTG--CTGA-CTTGGCTCCCACTCACCCGA-T 509
||| || ||| || | | ||| | | |||| ||| || | || || || | |
Sbjct 576 -CTATGAGGCTG--CAACACA-AGCTGCAAGCACTGAGCTT-CCTTCGACCCATCCAATT 630
Query 510 CAGACTGGGGCTTGCTCTTAACTTCTCTGTTTTCTACTATGAGATTC-TCAACTCATC-T 567
| | || || ||||||||||||||||||||||||||||||||||| | | ||||| || |
Sbjct 631 C-GTCTTGGCCTTGCTCTTAACTTCTCTGTTTTCTACTATGAGAT-CATGAACTC-TCCT 687
Query 568 GATCGTGCATGT-AGTCTCGCAAAGCAGGCTTTTGATGAGGCAATCT-CTGAGCTAGATA 625
|| | || || | | | || ||||| || || |||||||| || | | ||| ||||||
Sbjct 688 GAAAGAGCTTGCCATT-TGGCTAAGCAAGCCTTCGATGAGGCGAT-TGCAGAGTTAGATA 745
Query 626 CAT-TGGGAGAGGAATCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGTGATAAT 684
| | | | ||||| || ||||||||||| || |||||||||||||| || | || ||
Sbjct 746 C-TCTAAGTGAGGAGTCGTACAAGGACAGCACTTTGATCATGCAGCTCCTGAGAGACAAC 804
Query 685 CTCACCCTCTGGACTTCTGA 704
||||||||||||||||||||
Sbjct 805 CTCACCCTCTGGACTTCTGA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5