BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg893541

Length=963
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16285.1 | Symbols:  | F-box family protein | chr5:5332830-5...   307    1e-82
  AT1G09650.1 | Symbols:  | F-box and associated interaction doma...   159    3e-38
  AT1G12490.1 | Symbols:  | F-box associated ubiquitination effec...  80.5    3e-14
  AT4G19452.1 | Symbols:  | pseudogene of F-box family protein | ...  67.6    2e-10


> AT5G16285.1 | Symbols:  | F-box family protein | chr5:5332830-5333102 
REVERSE LENGTH=273
Length=273

 Score =  307 bits (166),  Expect = 1e-82
 Identities = 201/218 (92%), Gaps = 2/218 (1%)
 Strand=Plus/Plus

Query  19   ATGAGGATGGAATCGCTGCTGCCCCACCATGTAGTAGAGCGAATCCTGGAGAGTCTTGAG  78
            |||||||| |||||||||||||  ||  ||||||||||||||||||||||||| |||| |
Sbjct  1    ATGAGGATTGAATCGCTGCTGCAACATGATGTAGTAGAGCGAATCCTGGAGAGACTTGCG  60

Query  79   GTGAATTCTCTGCTTCGATTCAAGGCTGTATCGAAGCAATGGAAATCGACAATTGAATCC  138
            ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  61   GTGAATTCTCTGCCTCGATTCAAGGCTGTATCGAAGCAATGGAAATCAACAATTGAATCC  120

Query  139  CAATTCTTCCAAGGAAAACACTTGACGCATCGTCTCCAATCAGGAGATTCAGATGTTCTC  198
            ||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||
Sbjct  121  CAATTCTTCCAAGGAAAACACTTGACGCATCGTCAGCAATCAGGAGATCCAGTTGTTCTC  180

Query  199  ATGGTGGCCGTACATAATGACGAC-CCCCTGCACGTGG  235
            |||||| ||||| ||||||||||| |||| ||||||||
Sbjct  181  ATGGTGACCGTATATAATGACGACTCCCC-GCACGTGG  217


> AT1G09650.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:3125807-3127284 FORWARD LENGTH=1478
Length=1478

 Score =  159 bits (86),  Expect = 3e-38
 Identities = 198/247 (80%), Gaps = 28/247 (11%)
 Strand=Plus/Plus

Query  501   CTGCG-AGATGGGTCGCTTCATTGGTTCACCGAGACCGAGTGCCAAGAAACCAAAGTTAT  559
             ||||| |||||||||||||||||||||   |   ||||||||| | ||||||||| || |
Sbjct  846   CTGCGTAGATGGGTCGCTTCATTGGTT---C---ACCGAGTGCGAGGAAACCAAAATTCT  899

Query  560   ATCTTTCGATCTTCACACCGAAGC-T--CA--T---CTCTAAAGCTCCTTTTGTCAAT-T  610
              || |||||||||||||||||| | |  ||  |   |||||||||||| |||| |||| |
Sbjct  900   TTCGTTCGATCTTCACACCGAAACCTTTCAAGTTGTCTCTAAAGCTCCCTTTGCCAATGT  959

Query  611   CCGATCC-TTACGAGATCGTCATGTGCAATCTCGACAACCGCTTGTGCGTATCCGAGATG  669
               |||   || ||| || ||||||||||| |||||||||||||||||||| |||||||||
Sbjct  960   A-GATGGATT-CGATATAGTCATGTGCAACCTCGACAACCGCTTGTGCGTTTCCGAGATG  1017

Query  670   AAG-TGGCCCACCCAAGTGATATGGTCGTTCCTCGTTCAATTCAGACAACAAGACATGGG  728
             ||| || |||| ||||||||||||||| |||       |||||||  |||||||||||| 
Sbjct  1018  AAGCTG-CCCAACCAAGTGATATGGTCATTC-------AATTCAGGTAACAAGACATGGC  1069

Query  729   ACAAAAT  735
             |||||||
Sbjct  1070  ACAAAAT  1076


> AT1G12490.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr1:4260783-4261869 FORWARD LENGTH=1059
Length=1059

 Score = 80.5 bits (43),  Expect = 3e-14
 Identities = 74/89 (83%), Gaps = 2/89 (2%)
 Strand=Plus/Plus

Query  321  CTTTGTTTCATATAATAGCTGTGACGGTCTCGTTTGTCTCTACCAACCCAAAGAAC-CGG  379
            ||| ||||| | | ||||||||||||||||||||||||||||| ||  |   |||  | |
Sbjct  300  CTTAGTTTCTTTTGATAGCTGTGACGGTCTCGTTTGTCTCTACAAATACTG-GAAATCTG  358

Query  380  GTTTTGTGGTCAACCCCACCACTAGATGG  408
            ||| ||||||||| |||||||||||||||
Sbjct  359  GTTATGTGGTCAATCCCACCACTAGATGG  387


> AT4G19452.1 | Symbols:  | pseudogene of F-box family protein 
| chr4:10609555-10610200 REVERSE LENGTH=579
Length=579

 Score = 67.6 bits (36),  Expect = 2e-10
 Identities = 50/57 (88%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  614  ATCCTTACGAGATCGTCATGTGCAATCTCGACAACCGCTTGTGCGTATCCGAGATGA  670
            |||||||| | |||||| | | ||| || ||||||||||||||||||||||||||||
Sbjct  523  ATCCTTACAAAATCGTCTTTTACAACCTTGACAACCGCTTGTGCGTATCCGAGATGA  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47119629886


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5